ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028382 Ptbp3 10090 - 4:59471868-59549364 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030076 Ptbp3-001 59471868-59549364 protein_coding
  ENSMUST00000102883 Ptbp3-002 59475259-59549284 protein_coding
  ENSMUST00000134879 Ptbp3-003 59493189-59549257 nonsense_mediated_decay
  ENSMUST00000140925 Ptbp3-005 59517473-59548737 protein_coding
  ENSMUST00000148331 Ptbp3-006 59476648-59549314 protein_coding
  ENSMUST00000151313 Ptbp3-004 59501103-59514348 retained_intron
  ENSMUST00000172471 Ptbp3-013 59481443-59493285 protein_coding
  ENSMUST00000172768 Ptbp3-010 59476583-59548775 protein_coding
  ENSMUST00000173268 Ptbp3-012 59476935-59485772 retained_intron
  ENSMUST00000173699 Ptbp3-008 59475711-59549243 protein_coding
  ENSMUST00000173884 Ptbp3-011 59493239-59549265 protein_coding
  ENSMUST00000174586 Ptbp3-009 59472048-59549295 protein_coding
  ENSMUST00000174748 Ptbp3-007 59481448-59549252 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000030076ENSMUST00000173268ENSMUST00000174586
Transcript ID C166 Tie2+ EC mES
ENSMUST00000030076 28.282±2.70 16.500±2.80 11.583±1.59
ENSMUST00000173268 N/A 78.701±0.00 N/A
ENSMUST00000174586 21.609±2.33 11.111±4.04 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0005X7 CIL_0005X7_0002 CGP
CIL_000228 CIL_000228_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0033119 IEA negative regulation of RNA splicing
GO:0043249 IEA erythrocyte maturation
GO:0044822 IEA poly(A) RNA binding
GO:0045595 IEA regulation of cell differentiation
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043757 ptbp3 protein_coding Danio_rerio
ENSG00000119314 PTBP3 polypyrimidine tract binding protein 3 protein_coding Homo_sapiens

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