ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394601 PTBP1-002 ENSG00000011304 9606 + 19:797452-812312 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000394601
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000394601 21.955±0.50 31.404±12.03 47.826±0.00 20.928±8.99

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 TAS nucleolus
GO:0006397 TAS:IEA mRNA processing
GO:0008187 TAS poly-pyrimidine tract binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0033119 IDA negative regulation of RNA splicing
GO:0036002 IDA pre-mRNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0051148 IDA negative regulation of muscle cell differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172282 Ptbp1-001 protein_coding Mus_musculus 0 1941
ENSMUST00000165153 Ptbp1-004 retained_intron Mus_musculus 0 1251
ENSMUST00000057343 Ptbp1-008 nonsense_mediated_decay Mus_musculus 0 1055
ENSMUST00000165704 Ptbp1-002 protein_coding Mus_musculus 0 1055
ENSMUST00000095457 Ptbp1-005 protein_coding Mus_musculus 0 898
ENSMUST00000171216 Ptbp1-016 retained_intron Mus_musculus 0 857
ENSMUST00000169580 Ptbp1-006 retained_intron Mus_musculus 0 758
ENSMUST00000168988 Ptbp1-013 retained_intron Mus_musculus 0 691
ENSMUST00000099958 Ptbp1-009 processed_transcript Mus_musculus 0 608
ENSMUST00000164385 Ptbp1-018 retained_intron Mus_musculus 0 514
ENSMUST00000165724 Ptbp1-017 nonsense_mediated_decay Mus_musculus 0 460
ENSDART00000040308 ptbp3-201 protein_coding Danio_rerio 0 300
ENSDART00000146727 ptbp3-001 protein_coding Danio_rerio 0 300
ENSMUST00000169091 Ptbp1-015 protein_coding Mus_musculus 0 294
ENSMUST00000169483 Ptbp1-012 nonsense_mediated_decay Mus_musculus 0 248

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