ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: vacuolar protein sorting 13 homolog D (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000048707 VPS13D 9606 + 1:12230067-12512047 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000011700 VPS13D-014 12277121-12510361 protein_coding
  ENST00000460333 VPS13D-002 12299281-12373848 retained_intron
  ENST00000466732 VPS13D-010 12400310-12403948 nonsense_mediated_decay
  ENST00000469054 VPS13D-009 12344865-12349249 processed_transcript
  ENST00000473099 VPS13D-012 12497226-12506907 retained_intron
  ENST00000476045 VPS13D-013 12407254-12416827 processed_transcript
  ENST00000476169 VPS13D-007 12244424-12249603 processed_transcript
  ENST00000481484 VPS13D-011 12409838-12416827 processed_transcript
  ENST00000487188 VPS13D-004 12311526-12337988 processed_transcript
  ENST00000489961 VPS13D-008 12253734-12257955 processed_transcript
  ENST00000543710 VPS13D-005 12367670-12512047 processed_transcript
  ENST00000543766 VPS13D-006 12464940-12512047 protein_coding
  ENST00000613099 VPS13D-003 12230067-12512047 protein_coding
  ENST00000620676 VPS13D-001 12230067-12512047 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000011700ENST00000460333ENST00000543710ENST00000543766ENST00000613099ENST00000620676
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000011700 0.215±0.00 2.323±0.48 0.943±0.00 1.236±0.75
ENST00000460333 N/A N/A 1.471±0.00 3.565±2.62
ENST00000543710 0.905±0.00 N/A 1.415±0.00 N/A
ENST00000543766 1.655±0.00 N/A N/A N/A
ENST00000613099 0.161±0.00 3.170±1.24 0.951±0.00 1.504±0.87
ENST00000620676 N/A 1.073±0.00 0.831±0.00 0.446±0.00

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017986 vps13d protein_coding Danio_rerio
ENSMUSG00000020220 Vps13d protein_coding Mus_musculus

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