ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: AT rich interactive domain 1B (SWI1-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000049618 ARID1B 9606 + 6:156777929-157210779 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319584 ARID1B-004 156901373-157186620 protein_coding
  ENST00000346085 ARID1B-001 156777929-157210779 protein_coding
  ENST00000350026 ARID1B-009 156777929-157209150 protein_coding
  ENST00000400790 ARID1B-006 157148911-157186610 protein_coding
  ENST00000414678 ARID1B-005 156779433-157209267 protein_coding
  ENST00000452544 ARID1B-002 156935471-157152404 retained_intron
  ENST00000478761 ARID1B-003 157148790-157181198 processed_transcript
  ENST00000493658 ARID1B-007 157084766-157111150 retained_intron
  ENST00000494260 ARID1B-008 156829227-156870384 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000319584ENST00000346085ENST00000350026ENST00000414678ENST00000452544
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000319584 N/A N/A N/A N/A 3.853±0.97
ENST00000346085 1.012±0.00 0.397±0.18 2.464±0.00 N/A 0.953±0.14
ENST00000350026 N/A 0.792±0.65 N/A 1.321±0.00 2.635±1.55
ENST00000414678 1.466±0.15 3.947±2.72 7.102±0.00 4.849±0.00 6.029±2.21
ENST00000452544 N/A N/A N/A N/A 2.493±0.37

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00055G CIL_00055G_0001 CGP
CIL_00055F CIL_00055F_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0016514 IDA SWI/SNF complex
GO:0048096 NAS chromatin-mediated maintenance of transcription
GO:0071565 IEA nBAF complex
GO:0090544 IEA BAF-type complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092503 arid1b protein_coding Danio_rerio
ENSMUSG00000069729 Arid1b protein_coding Mus_musculus

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