ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: TAR (HIV-1) RNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000059588 TARBP1 9606 - 1:234391313-234479103 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000040877 TARBP1-001 234391313-234479103 protein_coding
  ENST00000462259 TARBP1-003 234391378-234406380 processed_transcript
  ENST00000463793 TARBP1-004 234410404-234420814 processed_transcript
  ENST00000468077 TARBP1-005 234398382-234405993 processed_transcript
  ENST00000471918 TARBP1-009 234391598-234392724 processed_transcript
  ENST00000481183 TARBP1-006 234400251-234410531 processed_transcript
  ENST00000483404 TARBP1-002 234391339-234407955 processed_transcript
  ENST00000484454 TARBP1-007 234398178-234400902 processed_transcript
  ENST00000496673 TARBP1-008 234391410-234401216 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000040877ENST00000462259ENST00000483404ENST00000496673
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000040877 0.184±0.02 2.947±0.59 N/A 2.520±0.00 2.328±1.55
ENST00000462259 1.730±0.19 2.448±0.00 23.314±0.00 N/A 6.503±4.92
ENST00000483404 N/A N/A 3.671±0.00 N/A 0.567±0.24
ENST00000496673 3.286±1.09 3.290±0.12 20.412±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007X4 CIL_0007X4_0001 VISTA
CIL_0006KD CIL_0006KD_0001 CGP
CIL_0006KE CIL_0006KE_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001510 IEA RNA methylation
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005634 TAS nucleus
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006396 IEA RNA processing
GO:0008173 IEA RNA methyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079055 TARBP1 (1 of 2) protein_coding Danio_rerio
ENSDARG00000092550 TARBP1 (2 of 2) protein_coding Danio_rerio
ENSMUSG00000090290 Gm17296 protein_coding Mus_musculus

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