ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: trinucleotide repeat containing 6B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100354 TNRC6B 9606 + 22:40044817-40335808 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301923 TNRC6B-201 40044817-40335807 protein_coding
  ENST00000335727 TNRC6B-002 40177942-40335808 protein_coding
  ENST00000402203 TNRC6B-001 40045474-40323360 protein_coding
  ENST00000441751 TNRC6B-004 40044817-40156182 protein_coding
  ENST00000446273 TNRC6B-003 40265003-40321799 protein_coding
  ENST00000454349 TNRC6B-202 40177925-40335807 protein_coding
  ENST00000467658 TNRC6B-007 40300856-40301495 retained_intron
  ENST00000489500 TNRC6B-005 40177925-40246362 retained_intron
  ENST00000497559 TNRC6B-006 40276840-40300498 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000301923ENST00000335727ENST00000402203ENST00000446273ENST00000454349ENST00000489500
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000301923 N/A 0.916±0.00 N/A N/A 0.676±0.27
ENST00000335727 0.101±0.00 1.979±1.07 0.223±0.00 0.921±0.00 1.755±0.91
ENST00000402203 1.271±0.06 1.837±0.19 N/A N/A 2.021±0.56
ENST00000446273 N/A 1.880±0.30 N/A 1.379±0.00 1.891±0.45
ENST00000454349 N/A 0.342±0.00 N/A N/A 0.365±0.09
ENST00000489500 N/A N/A N/A N/A 16.590±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0005W3 CIL_0005W3_0001 CGP
CIL_0006F2 CIL_0006F2_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0006417 IEA regulation of translation
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0031047 IMP gene silencing by RNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0060213 IMP positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 IMP positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074161 tnrc6b protein_coding Danio_rerio
ENSDARG00000076389 TNRC6B (2 of 3) protein_coding Danio_rerio
ENSDARG00000079723 TNRC6B (3 of 3) protein_coding Danio_rerio
ENSMUSG00000047888 Tnrc6b protein_coding Mus_musculus

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