ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: synaptophysin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102003 SYP 9606 - X:49187804-49200259 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263233 SYP-001 49187804-49200259 protein_coding
  ENST00000376303 SYP-003 49189253-49200193 nonsense_mediated_decay
  ENST00000466635 SYP-008 49194311-49200193 nonsense_mediated_decay
  ENST00000469389 SYP-009 49194191-49200193 nonsense_mediated_decay
  ENST00000472598 SYP-002 49189137-49200176 protein_coding
  ENST00000472737 SYP-007 49197377-49200195 retained_intron
  ENST00000479808 SYP-004 49190542-49200199 protein_coding
  ENST00000494396 SYP-005 49197017-49200195 retained_intron

Homo sapiens Ensembl GRCh38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000263233ENST00000376303ENST00000466635ENST00000469389ENST00000472598ENST00000479808ENST00000494396
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000263233 N/A 6.471±5.35 N/A 0.173±0.00 0.104±0.08
ENST00000376303 N/A N/A N/A N/A 0.053±0.00
ENST00000466635 N/A N/A N/A N/A 0.078±0.00
ENST00000469389 N/A N/A N/A N/A 0.100±0.00
ENST00000472598 N/A 0.069±0.00 N/A N/A N/A
ENST00000479808 0.157±0.00 0.093±0.01 N/A N/A 0.141±0.17
ENST00000494396 N/A 0.025±0.00 0.171±0.00 N/A 0.091±0.06

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006897 ISS endocytosis
GO:0008021 ISS synaptic vesicle
GO:0015485 IDA cholesterol binding
GO:0016020 IEA membrane
GO:0016188 NAS synaptic vesicle maturation
GO:0017075 IEA syntaxin-1 binding
GO:0019904 IEA protein domain specific binding
GO:0030054 IEA cell junction
GO:0030285 NAS integral component of synaptic vesicle membrane
GO:0030672 IEA synaptic vesicle membrane
GO:0032403 IEA protein complex binding
GO:0042169 IEA SH2 domain binding
GO:0042734 IEA presynaptic membrane
GO:0042802 IEA identical protein binding
GO:0043005 ISS neuron projection
GO:0043229 IEA intracellular organelle
GO:0043234 IEA protein complex
GO:0043621 TAS protein self-association
GO:0044306 IEA neuron projection terminus
GO:0045202 IEA synapse
GO:0048168 IBA regulation of neuronal synaptic plasticity
GO:0048169 ISS regulation of long-term neuronal synaptic plasticity
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity
GO:0048499 NAS synaptic vesicle membrane organization
GO:0048786 IEA presynaptic active zone
GO:0060076 IEA excitatory synapse
GO:0071310 IEA cellular response to organic substance
GO:2000474 ISS regulation of opioid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002230 sypb protein_coding Danio_rerio
ENSDARG00000042974 sypa protein_coding Danio_rerio
ENSMUSG00000031144 Syp protein_coding Mus_musculus

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