ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: small nuclear ribonucleoprotein 70kDa (U1)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104852 SNRNP70 9606 + 19:49085419-49108605 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221448 SNRNP70-003 49085451-49108563 protein_coding
  ENST00000401730 SNRNP70-004 49085451-49108603 nonsense_mediated_decay
  ENST00000544278 SNRNP70-006 49102411-49108602 retained_intron
  ENST00000595231 SNRNP70-005 49085495-49108605 nonsense_mediated_decay
  ENST00000597936 SNRNP70-008 49085451-49090639 retained_intron
  ENST00000598441 SNRNP70-001 49085423-49108479 protein_coding
  ENST00000598984 SNRNP70-007 49085423-49102118 protein_coding
  ENST00000599687 SNRNP70-010 49086524-49101668 retained_intron
  ENST00000601065 SNRNP70-002 49085419-49108598 nonsense_mediated_decay
  ENST00000601411 SNRNP70-009 49086480-49098459 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000221448ENST00000401730ENST00000544278ENST00000595231ENST00000597936ENST00000598441ENST00000601065
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000221448 178.007±0.63 77.395±33.68 N/A 38.767±0.00 27.707±16.28
ENST00000401730 N/A 3.128±0.04 N/A 16.711±0.00 21.147±29.43
ENST00000544278 19.271±0.00 10.591±0.68 83.929±0.00 11.906±0.00 14.578±14.31
ENST00000595231 122.083±0.00 35.381±8.26 N/A N/A N/A
ENST00000597936 N/A 17.336±0.00 N/A N/A 49.120±79.66
ENST00000598441 80.692±21.54 10.613±1.94 N/A 36.449±0.00 27.647±15.30
ENST00000601065 86.653±17.79 26.702±8.31 55.576±0.00 N/A 16.081±10.79

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0003AS CIL_0003AS_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IMP RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005685 IDA U1 snRNP
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0043484 IMP regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0048026 IEA positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077126 snrnp70 protein_coding Danio_rerio
ENSMUSG00000063511 Snrnp70 protein_coding Mus_musculus

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