ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: lymphotoxin beta receptor (TNFR superfamily, member 3)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111321 LTBR 9606 + 12:6375045-6391571 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000228918 LTBR-001 6384033-6391563 protein_coding
  ENST00000440421 LTBR-011 6385459-6386371 retained_intron
  ENST00000441074 LTBR-009 6388926-6391571 retained_intron
  ENST00000444814 LTBR-002 6385840-6387576 retained_intron
  ENST00000535739 LTBR-013 6384176-6386443 retained_intron
  ENST00000536876 LTBR-014 6384170-6386445 protein_coding
  ENST00000539925 LTBR-003 6375429-6391224 protein_coding
  ENST00000541005 LTBR-008 6388254-6390735 retained_intron
  ENST00000541102 LTBR-010 6385119-6391111 protein_coding
  ENST00000542830 LTBR-005 6375224-6385277 processed_transcript
  ENST00000543190 LTBR-012 6384253-6388506 protein_coding
  ENST00000543542 LTBR-007 6388392-6389052 retained_intron
  ENST00000544454 LTBR-006 6385111-6388825 nonsense_mediated_decay
  ENST00000545445 LTBR-015 6384998-6385455 retained_intron
  ENST00000546296 LTBR-004 6375045-6385157 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000228918ENST00000440421ENST00000441074ENST00000444814ENST00000536876ENST00000539925ENST00000541102ENST00000543190
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000228918 15.654±0.00 13.084±8.10 19.347±0.00 18.263±0.00 30.918±21.63
ENST00000440421 N/A N/A N/A N/A 2.362±1.21
ENST00000441074 N/A N/A N/A N/A 0.297±0.07
ENST00000444814 N/A N/A N/A N/A 0.399±0.00
ENST00000536876 N/A 8.292±2.19 N/A 25.590±0.00 0.764±0.00
ENST00000539925 N/A N/A N/A N/A 8.786±8.06
ENST00000541102 N/A N/A N/A 17.137±0.00 27.568±3.80
ENST00000543190 N/A 11.836±4.12 N/A N/A N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0006915 IEA apoptotic process
GO:0007165 TAS signal transduction
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0031625 IPI ubiquitin protein ligase binding
GO:0042802 IPI identical protein binding
GO:0043011 IEA myeloid dendritic cell differentiation
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046330 IMP positive regulation of JNK cascade
GO:0071260 IEP cellular response to mechanical stimulus
GO:2001238 IMP positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030339 Ltbr protein_coding Mus_musculus

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