ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: serine/arginine-rich splicing factor 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111786 SRSF9 9606 - 12:120461668-120469793 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229390 SRSF9-001 120461668-120469793 protein_coding
  ENST00000546942 SRSF9-002 120465139-120469718 retained_intron
  ENST00000548326 SRSF9-004 120461693-120463396 retained_intron
  ENST00000548792 SRSF9-003 120461711-120464943 retained_intron
  ENST00000550458 SRSF9-005 120463978-120469571 protein_coding
  ENST00000603963 SRSF9-006 120461762-120469639 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000229390ENST00000548326ENST00000548792
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000229390 146.889±43.77 148.722±46.76 46.522±0.00 127.154±0.00 91.998±45.88
ENST00000548326 N/A 8.043±0.33 12.569±0.00 N/A 7.952±4.68
ENST00000548792 N/A N/A 13.215±0.00 N/A 11.429±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0009CQ CIL_0009CQ_0001 VISTA
CIL_0007ZA CIL_0007ZA_0001 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006376 TAS mRNA splice site selection
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008097 srsf9 protein_coding Danio_rerio
ENSMUSG00000029538 Srsf9 protein_coding Mus_musculus

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