ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: collagen, type IX, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112280 COL9A1 9606 - 6:70215061-70303083 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320755 COL9A1-002 70216032-70283209 protein_coding
  ENST00000357250 COL9A1-001 70215061-70303083 protein_coding
  ENST00000360859 COL9A1-010 70240715-70258642 processed_transcript
  ENST00000370496 COL9A1-004 70279762-70303070 protein_coding
  ENST00000447041 COL9A1-007 70234560-70254758 processed_transcript
  ENST00000470652 COL9A1-003 70274012-70275178 retained_intron
  ENST00000486080 COL9A1-008 70216524-70246303 processed_transcript
  ENST00000489611 COL9A1-009 70216743-70280477 processed_transcript
  ENST00000489861 COL9A1-006 70252166-70254611 retained_intron
  ENST00000493682 COL9A1-005 70234909-70261078 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; HAoECHHSECHUVECENST00000320755ENST00000486080ENST00000489611
Transcript ID HAoEC HHSEC HUVEC
ENST00000320755 N/A N/A 0.002±0.00
ENST00000486080 0.041±0.02 0.062±0.00 0.050±0.01
ENST00000489611 0.018±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00061Y CIL_00061Y_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001894 IEA tissue homeostasis
GO:0003417 IEA growth plate cartilage development
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005594 IDA collagen type IX trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0009887 TAS organ morphogenesis
GO:0022617 TAS extracellular matrix disassembly
GO:0030020 IC extracellular matrix structural constituent conferring tensile strength
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0046872 IEA metal ion binding
GO:0051216 IEA cartilage development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031483 col9a1b protein_coding Danio_rerio
ENSDARG00000073699 col9a1a protein_coding Danio_rerio
ENSMUSG00000026147 Col9a1 protein_coding Mus_musculus

Loading