ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: sorting nexin 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129515 SNX6 9606 - 14:34561094-34630183 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000362031 SNX6-002 34562409-34630183 protein_coding
  ENST00000396526 SNX6-001 34561094-34630109 protein_coding
  ENST00000555416 SNX6-004 34567892-34630154 nonsense_mediated_decay
  ENST00000555541 SNX6-010 34575591-34586316 retained_intron
  ENST00000555648 SNX6-009 34605682-34629672 protein_coding
  ENST00000556162 SNX6-003 34562660-34630158 nonsense_mediated_decay
  ENST00000556303 SNX6-007 34605487-34630154 retained_intron
  ENST00000556712 SNX6-008 34586230-34630133 nonsense_mediated_decay
  ENST00000557265 SNX6-005 34586230-34630158 protein_coding
  ENST00000557341 SNX6-006 34603365-34630153 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000362031ENST00000396526ENST00000556303ENST00000557265
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000362031 13.006±5.67 23.485±4.67 9.313±0.00 47.184±0.00 26.820±20.96
ENST00000396526 N/A 2.651±0.03 N/A N/A 3.649±4.09
ENST00000556303 N/A N/A N/A N/A 25.674±13.46
ENST00000557265 N/A 14.347±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008RR CIL_0008RR_0001 VISTA
CIL_0005RF CIL_0005RF_0002 CGP
CIL_0005RE CIL_0005RE_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 NAS intracellular
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0006886 NAS intracellular protein transport
GO:0007175 NAS negative regulation of epidermal growth factor-activated receptor activity
GO:0030512 IDA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031410 IEA cytoplasmic vesicle
GO:0031901 IDA early endosome membrane
GO:0034713 IEA type I transforming growth factor beta receptor binding
GO:0035091 IBA:IEA phosphatidylinositol binding
GO:0042147 IMP retrograde transport, endosome to Golgi
GO:0042803 IPI protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058444 snx6 protein_coding Danio_rerio
ENSMUSG00000005656 Snx6 protein_coding Mus_musculus

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