ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: heterogeneous nuclear ribonucleoprotein A1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135486 HNRNPA1 9606 + 12:54280193-54287088 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330752 HNRNPA1-023 54280775-54284881 protein_coding
  ENST00000340913 HNRNPA1-002 54280755-54285214 protein_coding
  ENST00000546500 HNRNPA1-001 54280193-54287087 protein_coding
  ENST00000547276 HNRNPA1-012 54280780-54285251 protein_coding
  ENST00000547566 HNRNPA1-006 54280748-54287088 nonsense_mediated_decay
  ENST00000547708 HNRNPA1-015 54280748-54283878 protein_coding
  ENST00000547870 HNRNPA1-016 54280749-54282472 retained_intron
  ENST00000548688 HNRNPA1-013 54281006-54282626 protein_coding
  ENST00000550482 HNRNPA1-018 54282198-54284569 protein_coding
  ENST00000550994 HNRNPA1-014 54281186-54282284 protein_coding
  ENST00000551665 HNRNPA1-021 54285907-54287051 retained_intron
  ENST00000551679 HNRNPA1-020 54283723-54284371 retained_intron
  ENST00000551702 HNRNPA1-019 54280763-54282486 protein_coding
  ENST00000551803 HNRNPA1-022 54285947-54287087 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000330752ENST00000340913ENST00000546500ENST00000547276ENST00000547566ENST00000547708ENST00000550482ENST00000551665
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000330752 N/A 28.260±6.71 N/A N/A 88.743±52.40
ENST00000340913 52.642±19.00 51.271±13.40 N/A 59.933±0.00 88.229±48.11
ENST00000546500 N/A 6.724±0.18 N/A N/A 19.160±10.65
ENST00000547276 88.091±18.60 79.437±23.83 74.967±0.00 117.328±0.00 52.544±26.33
ENST00000547566 N/A 50.123±11.41 N/A N/A 59.099±32.09
ENST00000547708 N/A N/A N/A 227.603±0.00 168.334±48.37
ENST00000550482 75.887±28.90 156.350±19.43 62.038±0.00 171.916±0.00 165.826±123.01
ENST00000551665 N/A N/A 50.035±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007SU CIL_0007SU_0001 VISTA
CIL_00084M CIL_00084M_0001 VISTA
CIL_0002TM CIL_0002TM_0002 CGP
CIL_0002TL CIL_0002TL_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003697 IDA single-stranded DNA binding
GO:0003723 TAS RNA binding
GO:0003727 IC single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 TAS mRNA processing
GO:0006405 IC RNA export from nucleus
GO:0008219 IEA cell death
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051028 IEA mRNA transport
GO:0051168 IDA nuclear export
GO:0051170 IDA nuclear import
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011020 hnrnpa1a protein_coding Danio_rerio
ENSDARG00000036675 hnrnpa1b protein_coding Danio_rerio

Loading