ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: ring finger and CCCH-type domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135870 RC3H1 9606 - 1:173931214-174022297 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258349 RC3H1-201 173931214-173993064 protein_coding
  ENST00000367694 RC3H1-001 173938411-173993072 protein_coding
  ENST00000367696 RC3H1-003 173931214-174022297 protein_coding
  ENST00000479099 RC3H1-005 173938576-173941449 retained_intron
  ENST00000484867 RC3H1-002 173980949-173983033 retained_intron
  ENST00000531594 RC3H1-004 173961033-173961815 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000258349ENST00000367694ENST00000367696
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000258349 0.127±0.00 0.657±0.34 0.274±0.00 1.933±1.16
ENST00000367694 N/A 1.279±0.62 N/A 2.554±2.94
ENST00000367696 N/A 0.870±0.38 1.040±0.00 1.293±0.78

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0000956 ISS nuclear-transcribed mRNA catabolic process
GO:0001782 IEA B cell homeostasis
GO:0002634 ISS regulation of germinal center formation
GO:0002635 ISS negative regulation of germinal center formation
GO:0003729 IEA mRNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0004842 TAS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0010468 IEA regulation of gene expression
GO:0010494 ISS cytoplasmic stress granule
GO:0010608 ISS posttranscriptional regulation of gene expression
GO:0016567 TAS protein ubiquitination
GO:0030889 ISS negative regulation of B cell proliferation
GO:0033962 ISS cytoplasmic mRNA processing body assembly
GO:0042098 IEA T cell proliferation
GO:0043029 IEA T cell homeostasis
GO:0043488 ISS regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:0045623 ISS negative regulation of T-helper cell differentiation
GO:0046007 ISS negative regulation of activated T cell proliferation
GO:0046872 IEA metal ion binding
GO:0048535 IEA lymph node development
GO:0048536 IEA spleen development
GO:0050856 ISS regulation of T cell receptor signaling pathway
GO:0061470 IEA T follicular helper cell differentiation
GO:1901224 IEA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062550 rc3h1 protein_coding Danio_rerio
ENSDARG00000063182 RC3H1 (2 of 2) protein_coding Danio_rerio
ENSMUSG00000040423 Rc3h1 protein_coding Mus_musculus

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