ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: reticulon 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139970 RTN1 9606 - 14:59595976-59870966 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267484 RTN1-001 59595977-59870966 protein_coding
  ENST00000342503 RTN1-002 59595977-59630814 protein_coding
  ENST00000395090 RTN1-003 59595977-59630609 protein_coding
  ENST00000432103 RTN1-009 59596005-59727713 retained_intron
  ENST00000474911 RTN1-004 59596014-59607607 retained_intron
  ENST00000481205 RTN1-005 59595976-59606102 retained_intron
  ENST00000490111 RTN1-006 59603761-59605509 retained_intron
  ENST00000557422 RTN1-008 59596757-59630612 processed_transcript
  ENST00000611068 RTN1-201 59596328-59870752 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000267484ENST00000432103ENST00000474911ENST00000481205ENST00000490111ENST00000557422ENST00000611068
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000267484 0.092±0.00 0.175±0.11 N/A N/A 0.030±0.02
ENST00000432103 N/A 0.175±0.03 N/A N/A 0.053±0.02
ENST00000474911 0.137±0.00 0.464±0.17 0.564±0.00 0.232±0.00 0.088±0.08
ENST00000481205 N/A N/A N/A N/A 0.004±0.00
ENST00000490111 N/A 2.210±0.00 N/A N/A 0.343±0.00
ENST00000557422 N/A N/A N/A N/A 0.075±0.00
ENST00000611068 0.118±0.00 0.340±0.22 N/A N/A 0.050±0.03

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0000S5 CIL_0000S5_0001 CGP
CIL_0005ZY CIL_0005ZY_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0030176 TAS integral component of endoplasmic reticulum membrane
GO:0030182 IEP neuron differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006497 rtn1a protein_coding Danio_rerio
ENSDARG00000021143 rtn1b protein_coding Danio_rerio
ENSMUSG00000021087 Rtn1 protein_coding Mus_musculus

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