ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: ubiquitin specific peptidase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140455 USP3 9606 + 15:63504511-63594640 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268049 USP3-201 63529142-63594640 protein_coding
  ENST00000380324 USP3-001 63504611-63591467 protein_coding
  ENST00000538686 USP3-005 63537138-63591467 nonsense_mediated_decay
  ENST00000540797 USP3-202 63504511-63594640 protein_coding
  ENST00000557884 USP3-011 63504612-63559884 nonsense_mediated_decay
  ENST00000558157 USP3-003 63504635-63591444 nonsense_mediated_decay
  ENST00000558218 USP3-017 63586608-63590925 processed_transcript
  ENST00000558285 USP3-004 63532506-63590955 protein_coding
  ENST00000558925 USP3-013 63553333-63556701 retained_intron
  ENST00000559192 USP3-002 63504734-63594640 nonsense_mediated_decay
  ENST00000559257 USP3-008 63537105-63594633 nonsense_mediated_decay
  ENST00000559276 USP3-010 63527833-63537056 protein_coding
  ENST00000559711 USP3-006 63544625-63591136 protein_coding
  ENST00000559718 USP3-019 63588520-63591053 retained_intron
  ENST00000559771 USP3-009 63515446-63556742 protein_coding
  ENST00000559873 USP3-015 63504674-63588396 nonsense_mediated_decay
  ENST00000560070 USP3-014 63504595-63558187 protein_coding
  ENST00000560202 USP3-007 63588729-63594594 nonsense_mediated_decay
  ENST00000561326 USP3-016 63504656-63574152 processed_transcript
  ENST00000561381 USP3-018 63587970-63591003 retained_intron
  ENST00000561442 USP3-012 63504594-63553733 protein_coding

Homo sapiens Ensembl GRCh38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000268049ENST00000380324ENST00000540797ENST00000558157ENST00000558285ENST00000559192ENST00000559711ENST00000560202
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000268049 0.675±0.00 1.750±0.63 N/A N/A 1.954±1.06
ENST00000380324 N/A 5.133±2.32 N/A N/A 5.941±2.49
ENST00000540797 N/A N/A N/A N/A 1.725±0.10
ENST00000558157 N/A N/A N/A N/A 2.517±0.65
ENST00000558285 N/A 3.203±0.44 N/A 4.821±0.00 N/A
ENST00000559192 N/A N/A N/A N/A 1.522±0.00
ENST00000559711 N/A N/A N/A N/A 5.680±0.46
ENST00000560202 5.959±1.12 N/A 11.738±0.00 N/A 4.300±0.99

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000278 IMP mitotic cell cycle
GO:0000790 IDA nuclear chromatin
GO:0001046 IEA core promoter sequence-specific DNA binding
GO:0003682 IEA chromatin binding
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 TAS ubiquitin-specific protease activity
GO:0005634 IEA nucleus
GO:0006281 IMP DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0008270 IEA zinc ion binding
GO:0016578 IDA histone deubiquitination
GO:0031647 IDA regulation of protein stability
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042393 IPI histone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045641 usp3 protein_coding Danio_rerio
ENSMUSG00000032376 Usp3 protein_coding Mus_musculus

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