ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: synovial sarcoma translocation, chromosome 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141380 SS18 9606 - 18:26016253-26091217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269137 SS18-001 26018014-26090901 protein_coding
  ENST00000269138 SS18-007 26018007-26090598 nonsense_mediated_decay
  ENST00000415083 SS18-003 26016253-26090625 protein_coding
  ENST00000539244 SS18-006 26035091-26090613 nonsense_mediated_decay
  ENST00000542420 SS18-002 26017343-26091217 protein_coding
  ENST00000577572 SS18-011 26057699-26090625 nonsense_mediated_decay
  ENST00000577636 SS18-026 26052743-26091192 nonsense_mediated_decay
  ENST00000577751 SS18-008 26064832-26090135 processed_transcript
  ENST00000578595 SS18-021 26080371-26090100 processed_transcript
  ENST00000578700 SS18-010 26052823-26091216 nonsense_mediated_decay
  ENST00000578954 SS18-014 26052682-26090652 nonsense_mediated_decay
  ENST00000579061 SS18-024 26052705-26091192 protein_coding
  ENST00000579640 SS18-004 26017885-26090610 nonsense_mediated_decay
  ENST00000580003 SS18-012 26068260-26078386 retained_intron
  ENST00000580642 SS18-019 26078103-26090625 nonsense_mediated_decay
  ENST00000580751 SS18-018 26078076-26090625 nonsense_mediated_decay
  ENST00000580958 SS18-013 26018350-26035614 retained_intron
  ENST00000581021 SS18-022 26057695-26090135 protein_coding
  ENST00000581570 SS18-016 26057732-26090608 nonsense_mediated_decay
  ENST00000582092 SS18-027 26023613-26035065 processed_transcript
  ENST00000582448 SS18-009 26057719-26091192 nonsense_mediated_decay
  ENST00000582792 SS18-017 26057612-26090597 nonsense_mediated_decay
  ENST00000583595 SS18-015 26082383-26086027 processed_transcript
  ENST00000584083 SS18-023 26052771-26090096 protein_coding
  ENST00000585121 SS18-005 26018120-26090597 nonsense_mediated_decay
  ENST00000585241 SS18-025 26039410-26090625 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; HAoECHHSECHMVEC-DHUVECENST00000269137ENST00000269138ENST00000415083ENST00000539244ENST00000542420ENST00000579640ENST00000580958ENST00000585121
Transcript ID HAoEC HHSEC HMVEC-D HUVEC
ENST00000269137 4.213±0.00 N/A N/A 12.762±7.90
ENST00000269138 2.111±0.00 N/A N/A N/A
ENST00000415083 5.541±2.45 2.436±0.00 4.150±0.00 14.024±9.92
ENST00000539244 N/A N/A N/A 9.418±0.00
ENST00000542420 2.876±0.03 N/A 7.946±0.00 N/A
ENST00000579640 N/A N/A N/A 11.197±1.15
ENST00000580958 N/A N/A N/A 57.585±0.00
ENST00000585121 3.076±0.00 N/A N/A 0.721±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007LU CIL_0007LU_0001 UCNEbase
CIL_0008CS CIL_0008CS_0001 VISTA
CIL_0006ET CIL_0006ET_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000902 IEA cell morphogenesis
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005881 IEA cytoplasmic microtubule
GO:0006351 IEA transcription, DNA-templated
GO:0007010 IEA cytoskeleton organization
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0035556 IEA intracellular signal transduction
GO:0042493 IEA response to drug
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048013 IEA ephrin receptor signaling pathway
GO:0071564 IEA npBAF complex
GO:0097150 IEA neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000037013 Ss18 protein_coding Mus_musculus

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