ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: upstream binding protein 1 (LBP-1a)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153560 UBP1 9606 - 3:33388336-33441371 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000283628 UBP1-003 33390134-33440510 protein_coding
  ENST00000283629 UBP1-001 33388336-33440378 protein_coding
  ENST00000411650 UBP1-008 33396243-33411659 nonsense_mediated_decay
  ENST00000447368 UBP1-002 33388339-33440010 protein_coding
  ENST00000456378 UBP1-007 33412726-33440587 protein_coding
  ENST00000464787 UBP1-011 33392363-33396302 retained_intron
  ENST00000466441 UBP1-005 33390097-33396621 retained_intron
  ENST00000467613 UBP1-015 33400962-33412756 processed_transcript
  ENST00000481761 UBP1-009 33409285-33416820 processed_transcript
  ENST00000486388 UBP1-010 33390266-33408722 processed_transcript
  ENST00000490112 UBP1-014 33396582-33400267 retained_intron
  ENST00000492136 UBP1-004 33388338-33398438 retained_intron
  ENST00000496310 UBP1-006 33416793-33441371 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000283628ENST00000283629ENST00000447368ENST00000492136
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000283628 N/A 5.616±0.30 N/A N/A 3.568±1.87
ENST00000283629 1.346±0.05 6.981±2.84 N/A 8.410±0.00 7.682±3.25
ENST00000447368 5.704±1.88 19.280±6.18 23.588±0.00 20.647±0.00 17.886±9.09
ENST00000492136 N/A 1.899±0.14 N/A N/A 4.308±2.58

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0001TS CIL_0001TS_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005634 TAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0019079 TAS viral genome replication
GO:0045892 TAS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018000 ubp1 protein_coding Danio_rerio
ENSMUSG00000009741 Ubp1 protein_coding Mus_musculus

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