ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: PDZ and LIM domain 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154553 PDLIM3 9606 - 4:185500660-185535612 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284767 PDLIM3-201 185500660-185535558 protein_coding
  ENST00000284770 PDLIM3-001 185501697-185535508 protein_coding
  ENST00000284771 PDLIM3-002 185501751-185535612 protein_coding
  ENST00000504011 PDLIM3-003 185512094-185535491 retained_intron
  ENST00000504355 PDLIM3-008 185514146-185535507 retained_intron
  ENST00000505886 PDLIM3-006 185504545-185535466 nonsense_mediated_decay
  ENST00000512293 PDLIM3-005 185508301-185535507 nonsense_mediated_decay
  ENST00000512380 PDLIM3-010 185514315-185525122 retained_intron
  ENST00000514142 PDLIM3-004 185501751-185517717 retained_intron
  ENST00000514308 PDLIM3-011 185502256-185507087 retained_intron
  ENST00000515261 PDLIM3-007 185523143-185535507 retained_intron
  ENST00000620787 PDLIM3-202 185500660-185535558 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000284770ENST00000284771ENST00000504011ENST00000504355ENST00000505886ENST00000514142ENST00000515261
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000284770 N/A N/A N/A N/A 1.047±0.28
ENST00000284771 5.855±1.02 16.759±7.32 9.864±0.00 28.715±0.00 5.989±4.34
ENST00000504011 N/A 1.222±0.84 N/A 3.586±0.00 0.962±0.59
ENST00000504355 N/A N/A N/A N/A 3.540±1.00
ENST00000505886 N/A 10.341±0.00 N/A N/A N/A
ENST00000514142 N/A N/A 1.532±0.00 N/A 0.445±0.36
ENST00000515261 N/A N/A N/A N/A 1.780±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0000H0 CIL_0000H0_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0007015 IEA actin filament organization
GO:0007507 IEA heart development
GO:0008092 IEA cytoskeletal protein binding
GO:0008270 IEA zinc ion binding
GO:0008307 IEA structural constituent of muscle
GO:0015629 IEA actin cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011023 pdlim3a protein_coding Danio_rerio
ENSDARG00000014248 pdlim3b protein_coding Danio_rerio
ENSMUSG00000031636 Pdlim3 protein_coding Mus_musculus

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