ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: SMG1 phosphatidylinositol 3-kinase-related kinase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157106 SMG1 9606 - 16:18804853-18926454 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330588 SMG1-201 18884747-18900097 protein_coding
  ENST00000446231 SMG1-001 18804853-18926454 protein_coding
  ENST00000532700 SMG1-002 18884105-18926158 protein_coding
  ENST00000561940 SMG1-016 18812011-18816179 retained_intron
  ENST00000561947 SMG1-004 18875102-18896956 protein_coding
  ENST00000562668 SMG1-018 18847739-18849370 retained_intron
  ENST00000563235 SMG1-006 18857786-18876305 protein_coding
  ENST00000563448 SMG1-012 18838461-18850361 retained_intron
  ENST00000563836 SMG1-015 18896801-18911713 protein_coding
  ENST00000565224 SMG1-003 18875608-18900044 protein_coding
  ENST00000565324 SMG1-005 18807760-18896874 protein_coding
  ENST00000566328 SMG1-017 18866147-18868218 protein_coding
  ENST00000567737 SMG1-014 18924916-18926039 processed_transcript
  ENST00000568038 SMG1-009 18866687-18872550 nonsense_mediated_decay
  ENST00000568239 SMG1-007 18875947-18879661 retained_intron
  ENST00000569122 SMG1-013 18890889-18925750 protein_coding
  ENST00000569764 SMG1-010 18856338-18861487 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000446231ENST00000563448ENST00000565324ENST00000568239ENST00000569764
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000446231 N/A 2.955±2.81 N/A 8.170±0.00 4.774±3.87
ENST00000563448 N/A N/A N/A N/A 25.579±0.00
ENST00000565324 N/A 4.580±1.74 N/A N/A 4.529±4.51
ENST00000568239 1.010±0.00 N/A 3.561±0.00 N/A 12.403±0.39
ENST00000569764 N/A N/A N/A N/A 7.404±1.72

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007GM CIL_0007GM_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 NAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0004672 TAS protein kinase activity
GO:0004674 NAS protein serine/threonine kinase activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006281 IEA DNA repair
GO:0006406 TAS mRNA export from nucleus
GO:0006950 IDA response to stress
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0018105 IDA peptidyl-serine phosphorylation
GO:0044822 IDA poly(A) RNA binding
GO:0046777 IDA protein autophosphorylation
GO:0046854 IDA phosphatidylinositol phosphorylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054570 smg1 protein_coding Danio_rerio
ENSMUSG00000030655 Smg1 protein_coding Mus_musculus

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