ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: vacuolar protein sorting 28 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160948 VPS28 9606 - 8:144423601-144428563 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000292510 VPS28-201 144423601-144428563 protein_coding
  ENST00000377348 VPS28-202 144423601-144428563 protein_coding
  ENST00000524521 VPS28-015 144426471-144428543 processed_transcript
  ENST00000526054 VPS28-003 144423617-144426983 protein_coding
  ENST00000526204 VPS28-008 144423620-144426983 nonsense_mediated_decay
  ENST00000526734 VPS28-013 144425396-144428543 processed_transcript
  ENST00000526977 VPS28-004 144423617-144426983 retained_intron
  ENST00000527797 VPS28-007 144423672-144426998 retained_intron
  ENST00000528142 VPS28-001 144423622-144426983 retained_intron
  ENST00000529182 VPS28-002 144423617-144426983 protein_coding
  ENST00000530790 VPS28-014 144425718-144428544 protein_coding
  ENST00000530836 VPS28-006 144423631-144426983 nonsense_mediated_decay
  ENST00000530983 VPS28-005 144423621-144426983 retained_intron
  ENST00000531032 VPS28-012 144424105-144428543 protein_coding
  ENST00000531924 VPS28-016 144424965-144427294 retained_intron
  ENST00000533806 VPS28-011 144423864-144428548 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000292510ENST00000526054ENST00000526204ENST00000526734ENST00000526977ENST00000527797ENST00000529182ENST00000530983ENST00000531032ENST00000533806
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000292510 N/A 10.522±3.81 22.002±0.00 25.481±0.00 62.132±51.37
ENST00000526054 362.087±61.38 53.454±16.61 45.499±0.00 39.535±0.00 85.605±85.94
ENST00000526204 N/A N/A 10.982±0.00 N/A 9.281±1.48
ENST00000526734 N/A N/A N/A N/A 18.738±0.00
ENST00000526977 N/A N/A 8.945±0.00 N/A 13.001±2.14
ENST00000527797 N/A N/A 10.900±0.00 N/A 9.506±9.08
ENST00000529182 N/A N/A 23.319±0.00 N/A N/A
ENST00000530983 N/A N/A N/A N/A 6.505±4.42
ENST00000531032 N/A 29.064±13.17 N/A 37.601±0.00 87.136±77.77
ENST00000533806 N/A N/A N/A N/A 19.341±7.09

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007SS CIL_0007SS_0001 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000813 IDA ESCRT I complex
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0010008 TAS endosome membrane
GO:0015031 IEA protein transport
GO:0016032 TAS viral process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0019068 TAS virion assembly
GO:0019082 TAS viral protein processing
GO:0031397 IDA negative regulation of protein ubiquitination
GO:0043162 IC ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0075733 TAS intracellular transport of virus

Homologs

No Homologs available.

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