ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: ribosomal protein L38
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172809 RPL38 9606 + 17:74203582-74210655 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311111 RPL38-001 74203653-74210655 protein_coding
  ENST00000439590 RPL38-003 74203582-74209880 protein_coding
  ENST00000528433 RPL38-005 74203704-74204190 protein_coding
  ENST00000529123 RPL38-004 74203675-74204593 retained_intron
  ENST00000530646 RPL38-002 74203662-74206283 retained_intron
  ENST00000533498 RPL38-006 74203704-74209896 protein_coding
  ENST00000534490 RPL38-007 74203694-74209461 protein_coding
  ENST00000584577 RPL38-008 74203693-74209878 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000311111ENST00000439590ENST00000528433ENST00000530646ENST00000534490ENST00000584577
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000311111 N/A 35.286±4.56 N/A N/A 229.639±226.64
ENST00000439590 1357.925±176.71 471.249±177.06 733.872±0.00 395.145±0.00 525.990±536.01
ENST00000528433 N/A 2923.150±3.20 N/A N/A 1021.980±0.00
ENST00000530646 N/A N/A N/A N/A 2.197±0.84
ENST00000534490 N/A N/A N/A N/A 2035.363±1073.66
ENST00000584577 3766.485±222.21 1212.780±359.42 1256.290±0.00 1114.840±0.00 761.043±618.88

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00073F CIL_00073F_0001 CGP
CIL_0003AD CIL_0003AD_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001501 IEA skeletal system development
GO:0001503 IEA ossification
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006417 IEA regulation of translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007605 IEA sensory perception of sound
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0033291 IEA eukaryotic 80S initiation complex
GO:0034463 IEA 90S preribosome assembly
GO:0042474 IEA middle ear morphogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0048318 IEA axial mesoderm development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006413 rpl38 protein_coding Danio_rerio
ENSMUSG00000057322 Rpl38 protein_coding Mus_musculus

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