ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: chromodomain helicase DNA binding protein 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000177200 CHD9 9606 + 16:53055033-53329150 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000219084 CHD9-019 53235137-53327451 retained_intron
  ENST00000398510 CHD9-020 53156003-53327451 protein_coding
  ENST00000447540 CHD9-201 53055033-53327501 protein_coding
  ENST00000561869 CHD9-008 53055039-53121980 processed_transcript
  ENST00000562785 CHD9-011 53156006-53157462 protein_coding
  ENST00000562791 CHD9-014 53209780-53226403 processed_transcript
  ENST00000562806 CHD9-016 53249901-53254671 retained_intron
  ENST00000563410 CHD9-010 53131134-53156248 protein_coding
  ENST00000564255 CHD9-006 53157164-53250175 retained_intron
  ENST00000564582 CHD9-009 53099180-53122178 processed_transcript
  ENST00000564600 CHD9-017 53314506-53321563 nonsense_mediated_decay
  ENST00000564641 CHD9-018 53314867-53324141 nonsense_mediated_decay
  ENST00000564845 CHD9-003 53130921-53327451 protein_coding
  ENST00000565119 CHD9-015 53245733-53250649 processed_transcript
  ENST00000565442 CHD9-012 53208451-53222755 protein_coding
  ENST00000565803 CHD9-004 53207989-53268127 protein_coding
  ENST00000565832 CHD9-002 53099160-53222755 protein_coding
  ENST00000566029 CHD9-001 53055033-53329150 protein_coding
  ENST00000569225 CHD9-005 53235137-53248163 retained_intron
  ENST00000569794 CHD9-013 53208032-53209813 processed_transcript
  ENST00000615216 CHD9-202 53055033-53327501 protein_coding
  ENST00000622617 CHD9-203 53156543-53324895 protein_coding

Homo sapiens Ensembl GRCh38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000219084ENST00000398510ENST00000447540ENST00000564582ENST00000564845ENST00000565832ENST00000566029ENST00000615216ENST00000622617
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000219084 N/A 0.755±0.44 4.006±0.00 2.191±0.00 2.335±1.54
ENST00000398510 N/A 1.085±1.26 N/A 2.767±0.00 2.297±1.25
ENST00000447540 N/A 0.817±0.82 N/A 1.902±0.00 2.024±1.45
ENST00000564582 N/A 1.663±0.01 N/A N/A N/A
ENST00000564845 N/A 2.123±1.72 N/A N/A 0.784±0.48
ENST00000565832 N/A N/A N/A N/A 10.910±2.59
ENST00000566029 0.135±0.00 0.442±0.43 N/A N/A 1.228±0.70
ENST00000615216 N/A 1.122±0.72 N/A N/A N/A
ENST00000622617 N/A 2.176±0.00 N/A N/A 3.277±0.69

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007ON CIL_0007ON_0002 UCNEbase
CIL_00077Q CIL_00077Q_0001 CGP
CIL_0009C3 CIL_0009C3_0001 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0016787 IEA hydrolase activity
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074498 chd9 protein_coding Danio_rerio
ENSMUSG00000056608 Chd9 protein_coding Mus_musculus

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