ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: mutS homolog 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204410 MSH5 9606 + 6:31739948-31762834 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375703 MSH5-004 31740021-31762676 protein_coding
  ENST00000375740 MSH5-005 31740021-31762676 protein_coding
  ENST00000375750 MSH5-002 31739951-31762676 protein_coding
  ENST00000375755 MSH5-001 31739948-31762834 protein_coding
  ENST00000395853 MSH5-006 31756592-31762676 protein_coding
  ENST00000423982 MSH5-021 31740226-31762589 nonsense_mediated_decay
  ENST00000425703 MSH5-008 31739991-31744234 protein_coding
  ENST00000429846 MSH5-018 31761212-31762676 protein_coding
  ENST00000450148 MSH5-011 31743978-31759491 protein_coding
  ENST00000463094 MSH5-009 31740005-31743480 retained_intron
  ENST00000463144 MSH5-010 31741246-31762635 nonsense_mediated_decay
  ENST00000467319 MSH5-014 31758195-31759502 retained_intron
  ENST00000468136 MSH5-022 31753283-31759501 retained_intron
  ENST00000468602 MSH5-013 31751496-31759134 processed_transcript
  ENST00000482280 MSH5-019 31740005-31746331 processed_transcript
  ENST00000484309 MSH5-017 31759917-31762676 nonsense_mediated_decay
  ENST00000494458 MSH5-016 31761923-31762676 retained_intron
  ENST00000494646 MSH5-023 31759532-31760173 retained_intron
  ENST00000497269 MSH5-012 31744231-31754040 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000375703ENST00000375750ENST00000375755ENST00000395853ENST00000425703ENST00000429846ENST00000463094ENST00000463144ENST00000467319ENST00000482280
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000375703 N/A N/A N/A N/A 1.010±0.54
ENST00000375750 N/A N/A N/A N/A 1.252±0.00
ENST00000375755 N/A 0.907±0.41 N/A 1.270±0.00 0.980±0.64
ENST00000395853 1.941±0.34 2.779±1.08 7.473±0.00 N/A 4.219±4.84
ENST00000425703 N/A N/A N/A N/A 1.844±0.00
ENST00000429846 8.223±0.00 N/A N/A N/A N/A
ENST00000463094 N/A 1.547±0.00 N/A N/A 0.574±0.00
ENST00000463144 N/A 2.437±1.00 N/A 1.110±0.00 3.501±3.83
ENST00000467319 N/A N/A N/A N/A 7.343±0.00
ENST00000482280 N/A 1.885±0.00 N/A N/A 2.911±1.78

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000795 IBA synaptonemal complex
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006200 IBA ATP catabolic process
GO:0006298 IEA mismatch repair
GO:0007131 IBA reciprocal meiotic recombination
GO:0008094 IBA DNA-dependent ATPase activity
GO:0030983 IBA:IEA mismatched DNA binding
GO:0045143 IBA homologous chromosome segregation
GO:0051026 IBA chiasma assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077479 msh5 protein_coding Danio_rerio
ENSMUSG00000007035 Msh5 protein_coding Mus_musculus

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