ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: LSM14A, SCD6 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000257103 LSM14A 9606 + 19:34172504-34229515 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000433627 LSM14A-003 34172568-34229288 protein_coding
  ENST00000540746 LSM14A-002 34172525-34228096 protein_coding
  ENST00000544216 LSM14A-001 34172566-34229515 protein_coding
  ENST00000585887 LSM14A-009 34219706-34221779 non_stop_decay
  ENST00000586157 LSM14A-004 34172658-34219877 protein_coding
  ENST00000588582 LSM14A-005 34208196-34229279 retained_intron
  ENST00000589878 LSM14A-006 34172504-34196666 nonsense_mediated_decay
  ENST00000590416 LSM14A-008 34221350-34227617 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000433627ENST00000540746ENST00000544216ENST00000586157ENST00000588582ENST00000589878
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000433627 N/A 6.520±1.21 N/A N/A 8.284±5.25
ENST00000540746 N/A 7.523±2.99 N/A 21.932±0.00 14.969±5.59
ENST00000544216 3.026±1.73 5.333±1.83 7.098±0.00 15.878±0.00 11.007±7.47
ENST00000586157 N/A 11.252±2.16 N/A N/A 15.526±13.05
ENST00000588582 N/A N/A N/A N/A 1.345±0.19
ENST00000589878 N/A N/A N/A N/A 27.134±18.94

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003690 IEA double-stranded DNA binding
GO:0003725 IEA double-stranded RNA binding
GO:0003727 IEA single-stranded RNA binding
GO:0005737 IDA cytoplasm
GO:0006417 IEA regulation of translation
GO:0007275 IEA multicellular organismal development
GO:0010494 IDA cytoplasmic stress granule
GO:0033962 IDA cytoplasmic mRNA processing body assembly
GO:0039529 IEA RIG-I signaling pathway
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0051607 IEA defense response to virus
GO:0060340 IEA positive regulation of type I interferon-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006600 lsm14aa protein_coding Danio_rerio
ENSMUSG00000066568 Lsm14a protein_coding Mus_musculus

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