ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000861 Bcl11a 10090 + 11:24078056-24174123 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000881 Bcl11a-003 24078056-24173194 protein_coding
  ENSMUST00000109514 Bcl11a-006 24078173-24168429 protein_coding
  ENSMUST00000109516 Bcl11a-005 24078117-24174123 protein_coding
  ENSMUST00000118955 Bcl11a-001 24080670-24173558 protein_coding
  ENSMUST00000124148 Bcl11a-004 24078147-24090906 retained_intron
  ENSMUST00000127494 Bcl11a-002 24142379-24163291 processed_transcript

Mus musculus Ensembl GRCm38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; Tie2+ ECmESENSMUST00000000881ENSMUST00000109514ENSMUST00000109516ENSMUST00000118955ENSMUST00000124148
Transcript ID Tie2+ EC mES
ENSMUST00000000881 0.415±0.42 0.072±0.02
ENSMUST00000109514 0.385±0.62 0.022±0.01
ENSMUST00000109516 0.042±0.00 N/A
ENSMUST00000118955 0.114±0.00 N/A
ENSMUST00000124148 0.157±0.25 0.013±0.01

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008PG CIL_0008PG_0002 VISTA
CIL_0009DA CIL_0009DA_0002 VISTA
CIL_0008GM CIL_0008GM_0002 VISTA
CIL_0008WW CIL_0008WW_0002 VISTA
CIL_000881 CIL_000881_0002 VISTA
CIL_0007LM CIL_0007LM_0002 UCNEbase
CIL_0008BH CIL_0008BH_0002 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003676 IEA nucleic acid binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0010629 IMP negative regulation of gene expression
GO:0010976 IEA positive regulation of neuron projection development
GO:0010977 IEA negative regulation of neuron projection development
GO:0016604 IDA nuclear body
GO:0016925 IMP protein sumoylation
GO:0030183 IMP B cell differentiation
GO:0030217 IMP T cell differentiation
GO:0046872 IEA metal ion binding
GO:0046982 IEA protein heterodimerization activity
GO:0048671 IEA negative regulation of collateral sprouting
GO:0048672 IEA positive regulation of collateral sprouting
GO:0050773 IEA regulation of dendrite development
GO:2000171 IEA negative regulation of dendrite development
GO:2001141 IDA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061352 bcl11aa protein_coding Danio_rerio
ENSDARG00000063153 bcl11ab protein_coding Danio_rerio
ENSG00000119866 BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) protein_coding Homo_sapiens

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