ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002455 Prpf6 10090 + 2:181591868-181655660 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002529 Prpf6-201 181601319-181655660 protein_coding
  ENSMUST00000132714 Prpf6-002 181591868-181616076 protein_coding
  ENSMUST00000136481 Prpf6-001 181601316-181655651 protein_coding
  ENSMUST00000139955 Prpf6-003 181601373-181641425 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000002529ENSMUST00000136481
Transcript ID C166 Tie2+ EC mES
ENSMUST00000002529 N/A 2.211±0.54 N/A
ENSMUST00000136481 29.794±1.62 8.700±3.29 9.418±1.19

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004F5 CIL_0004F5_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003713 ISO transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005634 ISO nucleus
GO:0005682 IEA U5 snRNP
GO:0006403 IEA RNA localization
GO:0016020 IEA membrane
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex
GO:0050681 ISO androgen receptor binding
GO:0071001 IEA U4/U6 snRNP
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091367 prpf6 protein_coding Danio_rerio
ENSG00000101161 PRPF6 pre-mRNA processing factor 6 protein_coding Homo_sapiens

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