ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004872 Pax3 10090 - 1:78101267-78197134 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004994 Pax3-002 78101267-78196838 protein_coding
  ENSMUST00000087086 Pax3-001 78101270-78197134 protein_coding
  ENSMUST00000172555 Pax3-003 78183456-78197113 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000004994ENSMUST00000087086ENSMUST00000172555
Transcript ID C166 Tie2+ EC mES
ENSMUST00000004994 0.866±0.14 0.027±0.02 0.005±0.00
ENSMUST00000087086 0.458±0.07 N/A 0.019±0.00
ENSMUST00000172555 N/A 0.007±0.00 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0006XL CIL_0006XL_0002 CGP
CIL_0008C0 CIL_0008C0_0002 VISTA
CIL_0008LF CIL_0008LF_0002 VISTA
CIL_000464 CIL_000464_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001755 IMP neural crest cell migration
GO:0001843 IMP neural tube closure
GO:0003682 IDA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007507 IMP heart development
GO:0007517 IMP muscle organ development
GO:0008283 IMP cell proliferation
GO:0008284 IMP positive regulation of cell proliferation
GO:0014807 IGI regulation of somitogenesis
GO:0016477 IMP cell migration
GO:0021527 IGI spinal cord association neuron differentiation
GO:0021915 IGI neural tube development
GO:0035914 NAS skeletal muscle cell differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 ISO positive regulation of transcription, DNA-templated
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0048066 IMP developmental pigmentation
GO:0048663 IGI neuron fate commitment
GO:0055007 NAS cardiac muscle cell differentiation
GO:0060594 IMP mammary gland specification
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010192 pax3a protein_coding Danio_rerio
ENSDARG00000028348 pax3b protein_coding Danio_rerio
ENSG00000135903 PAX3 paired box 3 protein_coding Homo_sapiens

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