ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000007880 Arid1a 10090 - 4:133679008-133756769 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000008024 Arid1a-002 133679941-133756769 protein_coding
  ENSMUST00000105897 Arid1a-201 133679008-133753611 protein_coding
  ENSMUST00000138473 Arid1a-003 133689487-133753982 retained_intron
  ENSMUST00000139709 Arid1a-004 133720779-133723879 protein_coding
  ENSMUST00000145664 Arid1a-001 133679008-133753611 protein_coding
  ENSMUST00000168582 Arid1a-006 133719360-133720776 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000008024ENSMUST00000145664
Transcript ID C166 Tie2+ EC mES
ENSMUST00000008024 4.636±1.04 N/A N/A
ENSMUST00000145664 9.319±3.79 6.728±2.47 34.708±8.30

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007T4 CIL_0007T4_0002 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001843 IMP neural tube closure
GO:0003205 IMP cardiac chamber development
GO:0003408 IMP optic cup formation involved in camera-type eye development
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006325 IPI chromatin organization
GO:0006337 IEA nucleosome disassembly
GO:0006351 IEA transcription, DNA-templated
GO:0016514 IDA:ISS SWI/SNF complex
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0030520 ISS intracellular estrogen receptor signaling pathway
GO:0030521 ISS androgen receptor signaling pathway
GO:0030900 IMP forebrain development
GO:0031491 IDA nucleosome binding
GO:0042921 IEA glucocorticoid receptor signaling pathway
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0060674 IMP placenta blood vessel development
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex
GO:0090544 IDA BAF-type complex
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000117713 ARID1A AT rich interactive domain 1A (SWI-like) protein_coding Homo_sapiens

Loading