ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020697 Lig3 10090 + 11:82781108-82804274 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021039 Lig3-201 82781135-82804274 protein_coding
  ENSMUST00000080461 Lig3-002 82781185-82800653 protein_coding
  ENSMUST00000092849 Lig3-001 82781108-82802862 protein_coding
  ENSMUST00000131537 Lig3-008 82781198-82790305 protein_coding
  ENSMUST00000154887 Lig3-003 82797218-82799567 retained_intron
  ENSMUST00000155818 Lig3-005 82795685-82799550 retained_intron
  ENSMUST00000172609 Lig3-010 82781142-82796541 retained_intron
  ENSMUST00000172837 Lig3-012 82798349-82804274 protein_coding
  ENSMUST00000173009 Lig3-006 82781198-82790304 protein_coding
  ENSMUST00000173347 Lig3-007 82781193-82802025 protein_coding
  ENSMUST00000173722 Lig3-009 82781203-82804198 protein_coding
  ENSMUST00000173727 Lig3-011 82781193-82802026 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000092849ENSMUST00000173347ENSMUST00000173727
Transcript ID C166 Tie2+ EC mES
ENSMUST00000092849 6.937±0.92 2.321±0.73 4.769±0.41
ENSMUST00000173347 5.584±2.00 1.862±0.00 2.571±0.00
ENSMUST00000173727 5.365±1.04 N/A 3.179±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00055Q CIL_00055Q_0002 CGP
CIL_00055O CIL_00055O_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 IDA synaptonemal complex
GO:0003677 IEA DNA binding
GO:0003909 IEA DNA ligase activity
GO:0003910 IBA DNA ligase (ATP) activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IBA nucleus
GO:0005694 IBA chromosome
GO:0006266 IBA DNA ligation
GO:0006273 IBA lagging strand elongation
GO:0006288 IEA base-excision repair, DNA ligation
GO:0006289 IBA nucleotide-excision repair
GO:0006303 IMP double-strand break repair via nonhomologous end joining
GO:0006310 IEA DNA recombination
GO:0007049 IEA cell cycle
GO:0008270 IEA zinc ion binding
GO:0043504 IMP mitochondrial DNA repair
GO:0045910 IMP negative regulation of DNA recombination
GO:0051103 IEA DNA ligation involved in DNA repair
GO:0051301 IEA cell division
GO:0071897 IEA DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052553 lig3 protein_coding Danio_rerio
ENSG00000005156 LIG3 ligase III, DNA, ATP-dependent protein_coding Homo_sapiens

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