ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022194 Pabpn1 10090 + 14:54892500-54898169 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022808 Pabpn1-001 54894148-54898169 protein_coding
  ENSMUST00000116476 Pabpn1-003 54894148-54898156 protein_coding
  ENSMUST00000139985 Pabpn1-006 54894602-54897399 protein_coding
  ENSMUST00000140691 Pabpn1-004 54892500-54897183 protein_coding
  ENSMUST00000141446 Pabpn1-005 54894573-54897557 protein_coding
  ENSMUST00000146271 Pabpn1-007 54894833-54895890 protein_coding
  ENSMUST00000150975 Pabpn1-002 54894155-54898096 protein_coding
  ENSMUST00000172557 Pabpn1-009 54894618-54898134 protein_coding
  ENSMUST00000172695 Pabpn1-008 54894156-54898056 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000022808ENSMUST00000116476ENSMUST00000150975ENSMUST00000172557
Transcript ID C166 Tie2+ EC mES
ENSMUST00000022808 39.390±5.80 32.635±0.00 108.665±23.46
ENSMUST00000116476 N/A N/A 9.341±0.00
ENSMUST00000150975 N/A N/A 9.455±0.00
ENSMUST00000172557 49.523±0.82 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00090C CIL_00090C_0002 VISTA
CIL_0009BW CIL_0009BW_0002 VISTA
CIL_0008Q4 CIL_0008Q4_0002 VISTA
CIL_0008QH CIL_0008QH_0002 VISTA
CIL_00051H CIL_00051H_0002 CGP
CIL_00051J CIL_00051J_0002 CGP
CIL_00051C CIL_00051C_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006378 TAS mRNA polyadenylation
GO:0008143 TAS poly(A) binding
GO:0016973 IEA poly(A)+ mRNA export from nucleus
GO:0030529 ISS ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045373 pabpn1 protein_coding Danio_rerio
ENSG00000100836 PABPN1 poly(A) binding protein, nuclear 1 protein_coding Homo_sapiens

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