ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022283 Pabpc1 10090 - 15:36595661-36608973 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001809 Pabpc1-001 36595661-36608973 protein_coding
  ENSMUST00000142357 Pabpc1-005 36596024-36597426 processed_transcript
  ENSMUST00000146327 Pabpc1-002 36603496-36608973 processed_transcript
  ENSMUST00000146577 Pabpc1-003 36596024-36598312 processed_transcript
  ENSMUST00000147116 Pabpc1-004 36596201-36597736 processed_transcript
  ENSMUST00000155116 Pabpc1-007 36595907-36598019 protein_coding
  ENSMUST00000156793 Pabpc1-006 36598301-36602346 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000001809ENSMUST00000156793
Transcript ID C166 Tie2+ EC mES
ENSMUST00000001809 600.928±21.74 151.822±71.82 358.900±121.04
ENSMUST00000156793 N/A 276.643±186.66 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008143 ISS poly(A) binding
GO:0008266 ISO poly(U) RNA binding
GO:0008380 IEA RNA splicing
GO:0010494 ISS cytoplasmic stress granule
GO:0030529 ISS ribonucleoprotein complex
GO:0031047 IMP gene silencing by RNA
GO:0060213 IMP positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 IMP positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000623 ISS negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017219 pabpc1a protein_coding Danio_rerio
ENSDARG00000021140 pabpc1b protein_coding Danio_rerio

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