ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023033 Scn8a 10090 + 15:100869858-101045938 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000082209 Scn8a-201 100870683-101045929 protein_coding
  ENSMUST00000096198 Scn8a-009 100933429-100940798 protein_coding
  ENSMUST00000108908 Scn8a-002 100870952-101041610 protein_coding
  ENSMUST00000108909 Scn8a-001 100870904-101045938 protein_coding
  ENSMUST00000108910 Scn8a-202 100936271-101045929 protein_coding
  ENSMUST00000200933 Scn8a-007 100870661-100936327 protein_coding
  ENSMUST00000200959 Scn8a-010 100936306-100940421 protein_coding
  ENSMUST00000200963 Scn8a-012 100936325-101040688 protein_coding
  ENSMUST00000201246 Scn8a-014 101015937-101029807 processed_transcript
  ENSMUST00000201438 Scn8a-017 100955501-100961465 protein_coding
  ENSMUST00000201484 Scn8a-004 100869858-100936327 protein_coding
  ENSMUST00000201518 Scn8a-006 100870645-101011064 protein_coding
  ENSMUST00000201549 Scn8a-005 100870945-101041693 protein_coding
  ENSMUST00000202071 Scn8a-008 100871420-100936327 protein_coding
  ENSMUST00000202347 Scn8a-016 100956955-100959635 retained_intron
  ENSMUST00000202349 Scn8a-015 100956920-100959788 retained_intron
  ENSMUST00000202452 Scn8a-018 100968596-100970237 retained_intron
  ENSMUST00000202527 Scn8a-003 100869858-100936327 protein_coding
  ENSMUST00000202702 Scn8a-013 100957084-101002079 protein_coding
  ENSMUST00000202971 Scn8a-019 100970122-100974767 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000082209ENSMUST00000096198ENSMUST00000108910ENSMUST00000200963ENSMUST00000201438ENSMUST00000201518ENSMUST00000201549ENSMUST00000202349ENSMUST00000202452ENSMUST00000202527
Transcript ID C166 Tie2+ EC mES
ENSMUST00000082209 0.001±0.00 0.001±0.00 N/A
ENSMUST00000096198 N/A 0.207±0.16 N/A
ENSMUST00000108910 0.003±0.00 0.007±0.00 0.341±0.00
ENSMUST00000200963 0.005±0.00 N/A N/A
ENSMUST00000201438 0.016±0.00 N/A N/A
ENSMUST00000201518 0.005±0.00 N/A 0.650±0.00
ENSMUST00000201549 N/A 0.094±0.00 N/A
ENSMUST00000202349 0.073±0.00 N/A N/A
ENSMUST00000202452 0.037±0.00 N/A N/A
ENSMUST00000202527 0.068±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0006JW CIL_0006JW_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005248 IEA voltage-gated sodium channel activity
GO:0005886 IBA plasma membrane
GO:0007517 IMP muscle organ development
GO:0007605 IMP sensory perception of sound
GO:0007626 IMP locomotory behavior
GO:0007628 IMP adult walking behavior
GO:0008344 IMP adult locomotory behavior
GO:0009636 IDA response to toxic substance
GO:0016020 IDA membrane
GO:0019228 IBA neuronal action potential
GO:0030425 IDA dendrite
GO:0034706 IPI sodium channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0043025 IDA neuronal cell body
GO:0050905 IMP neuromuscular process
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005775 scn8aa protein_coding Danio_rerio
ENSDARG00000018032 scn8ab protein_coding Danio_rerio
ENSG00000196876 SCN8A sodium channel, voltage gated, type VIII, alpha subunit protein_coding Homo_sapiens

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