ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025223 Ldb1 10090 - 19:46032593-46045214 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026252 Ldb1-001 46032689-46044914 protein_coding
  ENSMUST00000056931 Ldb1-003 46032594-46039621 protein_coding
  ENSMUST00000126320 Ldb1-006 46033745-46034878 retained_intron
  ENSMUST00000136203 Ldb1-005 46034051-46036000 retained_intron
  ENSMUST00000137771 Ldb1-004 46033425-46039481 protein_coding
  ENSMUST00000152946 Ldb1-002 46032593-46045214 protein_coding
  ENSMUST00000156585 Ldb1-007 46032689-46045210 protein_coding
  ENSMUST00000185355 Ldb1-201 46032616-46045211 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000026252ENSMUST00000137771ENSMUST00000152946ENSMUST00000185355
Transcript ID C166 Tie2+ EC mES
ENSMUST00000026252 76.980±4.41 15.880±5.78 N/A
ENSMUST00000137771 31.130±4.51 18.653±0.60 N/A
ENSMUST00000152946 28.623±2.71 14.039±4.17 19.441±0.96
ENSMUST00000185355 N/A 13.456±1.42 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00099F CIL_00099F_0002 VISTA
CIL_00099E CIL_00099E_0002 VISTA
CIL_0005WD CIL_0005WD_0002 CGP
CIL_00058F CIL_00058F_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000972 IMP transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0000989 IPI transcription factor binding transcription factor activity
GO:0001102 IEA RNA polymerase II activating transcription factor binding
GO:0001158 IDA enhancer sequence-specific DNA binding
GO:0001702 IMP gastrulation with mouth forming second
GO:0001942 IGI hair follicle development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003712 IEA transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0009948 IMP anterior/posterior axis specification
GO:0010669 IGI epithelial structure maintenance
GO:0016055 IMP Wnt signaling pathway
GO:0019899 IPI enzyme binding
GO:0021549 IMP cerebellum development
GO:0021702 IMP cerebellar Purkinje cell differentiation
GO:0022607 IGI cellular component assembly
GO:0030182 IEP neuron differentiation
GO:0030274 IDA LIM domain binding
GO:0032784 IMP regulation of DNA-templated transcription, elongation
GO:0035019 IGI somatic stem cell maintenance
GO:0042803 IDA protein homodimerization activity
GO:0043234 IDA protein complex
GO:0043621 IPI protein self-association
GO:0043973 IMP histone H3-K4 acetylation
GO:0045647 IMP negative regulation of erythrocyte differentiation
GO:0045785 IGI positive regulation of cell adhesion
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046985 IMP positive regulation of hemoglobin biosynthetic process
GO:0060319 TAS primitive erythrocyte differentiation
GO:0060322 IGI head development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010137 ldb1a protein_coding Danio_rerio
ENSG00000198728 LDB1 LIM domain binding 1 protein_coding Homo_sapiens

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