ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026407 Cacna1s 10090 + 1:136052750-136119822 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000112064 Cacna1s-201 136052901-136119822 protein_coding
  ENSMUST00000112068 Cacna1s-001 136052784-136119535 protein_coding
  ENSMUST00000159106 Cacna1s-005 136117256-136119529 processed_transcript
  ENSMUST00000160641 Cacna1s-002 136052750-136119530 protein_coding
  ENSMUST00000161700 Cacna1s-004 136105406-136112058 retained_intron
  ENSMUST00000161865 Cacna1s-003 136073554-136119529 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166mESENSMUST00000112068ENSMUST00000159106ENSMUST00000161700ENSMUST00000161865
Transcript ID C166 mES
ENSMUST00000112068 0.049±0.03 0.017±0.00
ENSMUST00000159106 0.033±0.00 0.031±0.00
ENSMUST00000161700 0.030±0.00 N/A
ENSMUST00000161865 0.034±0.02 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0002074 IMP extraocular skeletal muscle development
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006816 IMP calcium ion transport
GO:0006936 IMP muscle contraction
GO:0006941 IMP striated muscle contraction
GO:0007029 IMP endoplasmic reticulum organization
GO:0007519 IMP skeletal muscle tissue development
GO:0007520 IMP myoblast fusion
GO:0007528 IMP neuromuscular junction development
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0016529 IDA sarcoplasmic reticulum
GO:0030315 IDA T-tubule
GO:0031674 IEA I band
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043501 IMP skeletal muscle adaptation
GO:0048741 IMP skeletal muscle fiber development
GO:0055001 IMP muscle cell development
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029457 cacna1sa protein_coding Danio_rerio
ENSDARG00000042552 cacna1sb protein_coding Danio_rerio
ENSG00000081248 CACNA1S calcium channel, voltage-dependent, L type, alpha 1S subunit protein_coding Homo_sapiens

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