ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026470 Stx6 10090 + 1:155158715-155208256 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027743 Stx6-001 155158715-155205659 protein_coding
  ENSMUST00000191769 Stx6-008 155158799-155177959 retained_intron
  ENSMUST00000192091 Stx6-004 155184310-155188338 retained_intron
  ENSMUST00000192311 Stx6-006 155187826-155193762 retained_intron
  ENSMUST00000192519 Stx6-010 155158771-155191521 processed_transcript
  ENSMUST00000192690 Stx6-002 155191503-155208256 protein_coding
  ENSMUST00000193059 Stx6-009 155158719-155201944 nonsense_mediated_decay
  ENSMUST00000194158 Stx6-007 155195021-155202247 processed_transcript
  ENSMUST00000195302 Stx6-003 155158748-155198255 protein_coding
  ENSMUST00000195693 Stx6-005 155187382-155202022 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000027743ENSMUST00000192091ENSMUST00000192311ENSMUST00000195302
Transcript ID C166 Tie2+ EC mES
ENSMUST00000027743 9.060±0.92 15.822±10.76 3.149±0.72
ENSMUST00000192091 N/A 1.494±0.00 N/A
ENSMUST00000192311 N/A 11.925±0.00 N/A
ENSMUST00000195302 8.638±0.49 21.112±0.00 8.643±1.98

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007W1 CIL_0007W1_0002 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IBA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005769 IEA early endosome
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0006886 IBA intracellular protein transport
GO:0006906 IBA vesicle fusion
GO:0007032 IMP endosome organization
GO:0016020 IDA membrane
GO:0016021 IBA integral component of membrane
GO:0031201 IBA SNARE complex
GO:0032588 IDA trans-Golgi network membrane
GO:0042147 IBA retrograde transport, endosome to Golgi
GO:0048193 IEA Golgi vesicle transport
GO:0048471 IEA perinuclear region of cytoplasm
GO:0055037 ISO recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042742 stx6 protein_coding Danio_rerio
ENSG00000135823 STX6 syntaxin 6 protein_coding Homo_sapiens

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