ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027620 Rbm39 10090 - 2:156147239-156180238 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029149 Rbm39-018 156147249-156180167 protein_coding
  ENSMUST00000109584 Rbm39-022 156174774-156180238 protein_coding
  ENSMUST00000109587 Rbm39-001 156147239-156180238 protein_coding
  ENSMUST00000126992 Rbm39-020 156161829-156180142 protein_coding
  ENSMUST00000128243 Rbm39-012 156178559-156180212 retained_intron
  ENSMUST00000130516 Rbm39-006 156163986-156168148 retained_intron
  ENSMUST00000131625 Rbm39-016 156162813-156169231 processed_transcript
  ENSMUST00000132929 Rbm39-007 156177161-156180196 retained_intron
  ENSMUST00000135274 Rbm39-017 156161831-156165212 retained_intron
  ENSMUST00000137297 Rbm39-014 156172954-156177901 retained_intron
  ENSMUST00000137340 Rbm39-004 156178561-156180145 retained_intron
  ENSMUST00000137566 Rbm39-009 156174689-156180156 nonsense_mediated_decay
  ENSMUST00000138381 Rbm39-015 156167538-156177731 retained_intron
  ENSMUST00000140001 Rbm39-010 156170040-156177383 processed_transcript
  ENSMUST00000142071 Rbm39-026 156147249-156180149 nonsense_mediated_decay
  ENSMUST00000146288 Rbm39-021 156164806-156180159 protein_coding
  ENSMUST00000146297 Rbm39-003 156147246-156179580 protein_coding
  ENSMUST00000146549 Rbm39-008 156172833-156180161 nonsense_mediated_decay
  ENSMUST00000147098 Rbm39-013 156172932-156180147 nonsense_mediated_decay
  ENSMUST00000148794 Rbm39-019 156149236-156164923 protein_coding
  ENSMUST00000150272 Rbm39-011 156164920-156172961 processed_transcript
  ENSMUST00000152919 Rbm39-005 156177361-156180149 nonsense_mediated_decay
  ENSMUST00000153514 Rbm39-025 156147940-156180184 nonsense_mediated_decay
  ENSMUST00000154677 Rbm39-024 156174685-156179912 nonsense_mediated_decay
  ENSMUST00000155837 Rbm39-002 156147940-156180176 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000029149ENSMUST00000109587ENSMUST00000146297ENSMUST00000152919ENSMUST00000153514ENSMUST00000155837
Transcript ID C166 Tie2+ EC mES
ENSMUST00000029149 73.413±7.87 41.191±16.25 27.959±3.83
ENSMUST00000109587 22.144±0.88 28.063±1.35 59.486±11.12
ENSMUST00000146297 N/A N/A 21.044±0.00
ENSMUST00000152919 N/A 77.298±0.00 N/A
ENSMUST00000153514 N/A 19.410±0.00 N/A
ENSMUST00000155837 26.154±3.18 22.731±1.16 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008EI CIL_0008EI_0002 VISTA
CIL_0000WY CIL_0000WY_0002 CGP
CIL_0000X2 CIL_0000X2_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003713 TAS transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005815 IEA microtubule organizing center
GO:0006351 TAS transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0015630 IEA microtubule cytoskeleton
GO:0044822 IEA poly(A) RNA binding
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011613 rbm39a protein_coding Danio_rerio
ENSG00000131051 RBM39 RNA binding motif protein 39 protein_coding Homo_sapiens

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