ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027639 Samhd1 10090 - 2:157097533-157135265 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057725 Samhd1-001 157097533-157135265 protein_coding
  ENSMUST00000088523 Samhd1-201 157101360-157135222 protein_coding
  ENSMUST00000109549 Samhd1-002 157103345-157135206 protein_coding
  ENSMUST00000123932 Samhd1-003 157099401-157135093 nonsense_mediated_decay
  ENSMUST00000139149 Samhd1-008 157107512-157110040 retained_intron
  ENSMUST00000139263 Samhd1-005 157099401-157135120 protein_coding
  ENSMUST00000142508 Samhd1-007 157109124-157110611 retained_intron
  ENSMUST00000149313 Samhd1-004 157119564-157134937 retained_intron
  ENSMUST00000152866 Samhd1-006 157121847-157130057 retained_intron
  ENSMUST00000160213 Samhd1-009 157101694-157110612 retained_intron

Mus musculus Ensembl GRCm38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000057725ENSMUST00000088523ENSMUST00000123932ENSMUST00000139263
Transcript ID C166 Tie2+ EC mES
ENSMUST00000057725 11.867±2.84 5.222±0.63 4.169±1.97
ENSMUST00000088523 N/A 5.238±0.53 N/A
ENSMUST00000123932 N/A 2.660±0.00 N/A
ENSMUST00000139263 9.454±0.92 9.317±3.54 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004XX CIL_0004XX_0002 CGP
CIL_0004ZW CIL_0004ZW_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 ISS nucleic acid binding
GO:0003723 ISS RNA binding
GO:0005634 ISS nucleus
GO:0005886 IEA plasma membrane
GO:0006203 ISS dGTP catabolic process
GO:0008270 ISS zinc ion binding
GO:0008832 ISS dGTPase activity
GO:0032567 ISS dGTP binding
GO:0045087 IEA innate immune response
GO:0045088 ISS regulation of innate immune response
GO:0046061 ISS dATP catabolic process
GO:0051289 IEA protein homotetramerization
GO:0051607 ISS defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071288 samhd1 protein_coding Danio_rerio
ENSG00000101347 SAMHD1 SAM domain and HD domain 1 protein_coding Homo_sapiens

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