ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027787 Nmd3 10090 + 3:69721985-69756373 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029358 Nmd3-001 69721985-69756373 protein_coding
  ENSMUST00000127211 Nmd3-002 69722090-69731976 retained_intron
  ENSMUST00000135266 Nmd3-005 69722083-69730533 nonsense_mediated_decay
  ENSMUST00000143041 Nmd3-003 69722032-69735089 nonsense_mediated_decay
  ENSMUST00000143249 Nmd3-006 69722255-69726409 protein_coding
  ENSMUST00000149680 Nmd3-004 69721985-69724461 retained_intron
  ENSMUST00000150210 Nmd3-007 69746432-69749042 retained_intron
  ENSMUST00000194168 Nmd3-009 69724236-69740037 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000029358ENSMUST00000149680ENSMUST00000150210ENSMUST00000194168
Transcript ID C166 Tie2+ EC mES
ENSMUST00000029358 1.340±0.11 0.615±0.25 1.198±0.19
ENSMUST00000149680 21.261±1.68 N/A N/A
ENSMUST00000150210 10.849±1.81 13.913±7.03 11.096±1.35
ENSMUST00000194168 19.570±1.84 8.608±2.83 9.422±2.21

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0001Z9 CIL_0001Z9_0002 CGP
CIL_0004K1 CIL_0004K1_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000055 IEA ribosomal large subunit export from nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0030674 IEA protein binding, bridging
GO:0043023 IEA ribosomal large subunit binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015676 nmd3 protein_coding Danio_rerio
ENSG00000169251 NMD3 NMD3 ribosome export adaptor protein_coding Homo_sapiens

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