ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028273 Pdlim5 10090 - 3:142239590-142395696 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029941 Pdlim5-001 142239590-142395693 protein_coding
  ENSMUST00000058626 Pdlim5-201 142303328-142395696 protein_coding
  ENSMUST00000090134 Pdlim5-010 142302315-142395607 protein_coding
  ENSMUST00000168967 Pdlim5-003 142302320-142391850 protein_coding
  ENSMUST00000170361 Pdlim5-011 142302080-142391850 protein_coding
  ENSMUST00000195975 Pdlim5-004 142242680-142391808 protein_coding
  ENSMUST00000196050 Pdlim5-012 142244461-142246549 retained_intron
  ENSMUST00000196220 Pdlim5-006 142242680-142391808 protein_coding
  ENSMUST00000196908 Pdlim5-002 142303221-142395618 protein_coding
  ENSMUST00000197808 Pdlim5-008 142249427-142304442 protein_coding
  ENSMUST00000198381 Pdlim5-007 142242680-142395578 protein_coding
  ENSMUST00000200043 Pdlim5-005 142242680-142391808 protein_coding
  ENSMUST00000200650 Pdlim5-009 142249368-142303979 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000029941
Transcript ID C166 Tie2+ EC mES
ENSMUST00000029941 33.678±8.95 13.209±4.29 1.536±0.77

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00091X CIL_00091X_0002 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005080 IEA protein kinase C binding
GO:0005515 IPI protein binding
GO:0005829 ISS cytosol
GO:0008270 IEA zinc ion binding
GO:0014069 ISS postsynaptic density
GO:0015629 IEA actin cytoskeleton
GO:0016020 IEA membrane
GO:0030018 IDA Z disc
GO:0030054 IEA cell junction
GO:0042805 IEA actinin binding
GO:0043005 IEA neuron projection
GO:0045211 IEA postsynaptic membrane
GO:0047485 IEA protein N-terminus binding
GO:0051963 ISS regulation of synapse assembly
GO:0061001 ISS regulation of dendritic spine morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027600 pdlim5b protein_coding Danio_rerio
ENSG00000163110 PDLIM5 PDZ and LIM domain 5 protein_coding Homo_sapiens

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