ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028960 Ube4b 10090 - 4:149328416-149426749 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084123 Ube4b-003 149365401-149426631 retained_intron
  ENSMUST00000103212 Ube4b-001 149328416-149426749 protein_coding
  ENSMUST00000131986 Ube4b-004 149398512-149399378 processed_transcript
  ENSMUST00000136732 Ube4b-008 149350729-149351706 retained_intron
  ENSMUST00000138027 Ube4b-005 149387081-149387662 processed_transcript
  ENSMUST00000138181 Ube4b-002 149328422-149335114 nonsense_mediated_decay
  ENSMUST00000153430 Ube4b-006 149335202-149336108 processed_transcript
  ENSMUST00000155968 Ube4b-007 149329499-149331832 processed_transcript
  ENSMUST00000172643 Ube4b-010 149385126-149426600 processed_transcript
  ENSMUST00000172836 Ube4b-012 149329676-149425905 nonsense_mediated_decay
  ENSMUST00000173005 Ube4b-009 149398500-149426216 retained_intron
  ENSMUST00000174343 Ube4b-011 149329676-149425905 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000084123ENSMUST00000103212ENSMUST00000172836ENSMUST00000174343
Transcript ID C166 Tie2+ EC mES
ENSMUST00000084123 N/A 5.075±0.00 N/A
ENSMUST00000103212 16.616±3.40 10.999±3.64 22.462±1.56
ENSMUST00000172836 9.674±0.00 N/A N/A
ENSMUST00000174343 8.719±0.83 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008IM CIL_0008IM_0002 VISTA
CIL_0006QX CIL_0006QX_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IEA:TAS ubiquitin ligase complex
GO:0005737 IDA cytoplasm
GO:0006457 NAS protein folding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008626 ISS granzyme-mediated apoptotic signaling pathway
GO:0009411 ISS response to UV
GO:0016567 IEA protein ubiquitination
GO:0019899 IPI enzyme binding
GO:0034450 IEA ubiquitin-ubiquitin ligase activity
GO:0042787 TAS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051082 NAS unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037017 ube4b protein_coding Danio_rerio
ENSG00000130939 UBE4B ubiquitination factor E4B protein_coding Homo_sapiens

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