ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029474 Rnf34 10090 + 5:122850048-122871291 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031434 Rnf34-001 122850048-122871291 protein_coding
  ENSMUST00000198602 Rnf34-002 122850157-122864295 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000031434
Transcript ID C166 Tie2+ EC mES
ENSMUST00000031434 8.437±1.09 3.349±0.41 7.387±1.85

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007G3 CIL_0007G3_0003 CGP
CIL_0007G4 CIL_0007G4_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002039 IEA p53 binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005886 ISS plasma membrane
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031625 IEA ubiquitin protein ligase binding
GO:0035872 ISS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0042787 IMP protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0061630 ISS ubiquitin protein ligase activity
GO:0070417 IMP cellular response to cold
GO:0070936 ISS protein K48-linked ubiquitination
GO:1901797 ISS negative regulation of signal transduction by p53 class mediator
GO:1901981 ISS phosphatidylinositol phosphate binding
GO:1902042 ISS negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2000374 IMP regulation of oxygen metabolic process
GO:2001271 ISS negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038300 rnf34a protein_coding Danio_rerio
ENSDARG00000054036 rnf34b protein_coding Danio_rerio
ENSG00000170633 RNF34 ring finger protein 34, E3 ubiquitin protein ligase protein_coding Homo_sapiens

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