ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029844 Hoxa1 10090 - 6:52155590-52158317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000964 Hoxa1-001 52155590-52158317 protein_coding
  ENSMUST00000120363 Hoxa1-002 52155595-52158317 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000000964ENSMUST00000120363
Transcript ID C166 Tie2+ EC mES
ENSMUST00000000964 4.892±1.25 0.752±0.00 0.597±0.23
ENSMUST00000120363 1.967±0.46 N/A 0.195±0.04

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007OD CIL_0007OD_0003 UCNEbase
CIL_0008JP CIL_0008JP_0002 VISTA
CIL_0008V2 CIL_0008V2_0002 VISTA
CIL_0003PD CIL_0003PD_0002 CGP
CIL_0008QL CIL_0008QL_0002 VISTA
CIL_000911 CIL_000911_0002 VISTA
CIL_000811 CIL_000811_0002 VISTA
CIL_00097P CIL_00097P_0002 VISTA
CIL_0003PE CIL_0003PE_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007399 IMP nervous system development
GO:0007605 IEA sensory perception of sound
GO:0007634 IEA optokinetic behavior
GO:0008045 IGI motor neuron axon guidance
GO:0009653 IGI anatomical structure morphogenesis
GO:0009952 IGI anterior/posterior pattern specification
GO:0021569 IGI rhombomere 3 development
GO:0021570 IGI rhombomere 4 development
GO:0021571 IGI rhombomere 5 development
GO:0021599 IEA abducens nerve formation
GO:0021612 IGI facial nerve structural organization
GO:0021754 IMP facial nucleus development
GO:0021953 IMP central nervous system neuron differentiation
GO:0030902 IMP hindbrain development
GO:0042472 IMP inner ear morphogenesis
GO:0042473 IEA outer ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IGI anatomical structure formation involved in morphogenesis
GO:0048702 IEA embryonic neurocranium morphogenesis
GO:0048839 IEA inner ear development
GO:0048844 IEA artery morphogenesis
GO:0050795 IEA regulation of behavior
GO:0050890 IEA cognition
GO:0050905 IEA neuromuscular process
GO:0060840 IEA artery development
GO:0060876 IEA semicircular canal formation
GO:0071300 IDA cellular response to retinoic acid
GO:0090102 IEA cochlea development
GO:0090103 IEA cochlea morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008174 hoxb1a protein_coding Danio_rerio
ENSDARG00000054033 hoxb1b protein_coding Danio_rerio
ENSDARG00000070337 hoxc1a protein_coding Danio_rerio
ENSG00000105991 HOXA1 homeobox A1 protein_coding Homo_sapiens

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