ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032580 Rbm5 10090 - 9:107740371-107770996 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035199 Rbm5-004 107740500-107770987 protein_coding
  ENSMUST00000181993 Rbm5-019 107769185-107770959 retained_intron
  ENSMUST00000182007 Rbm5-008 107758444-107770959 retained_intron
  ENSMUST00000182022 Rbm5-012 107760319-107770959 protein_coding
  ENSMUST00000182026 Rbm5-018 107741964-107744286 protein_coding
  ENSMUST00000182073 Rbm5-009 107765091-107770989 retained_intron
  ENSMUST00000182215 Rbm5-017 107743333-107744234 retained_intron
  ENSMUST00000182304 Rbm5-011 107754123-107770495 protein_coding
  ENSMUST00000182332 Rbm5-016 107744269-107750022 retained_intron
  ENSMUST00000182371 Rbm5-002 107740500-107770980 nonsense_mediated_decay
  ENSMUST00000182421 Rbm5-003 107746044-107770951 nonsense_mediated_decay
  ENSMUST00000182422 Rbm5-013 107751881-107754602 retained_intron
  ENSMUST00000182518 Rbm5-005 107766605-107770986 retained_intron
  ENSMUST00000182659 Rbm5-001 107740371-107770996 protein_coding
  ENSMUST00000182792 Rbm5-020 107745194-107749911 retained_intron
  ENSMUST00000182836 Rbm5-015 107750293-107751962 retained_intron
  ENSMUST00000182856 Rbm5-014 107750500-107754090 retained_intron
  ENSMUST00000183248 Rbm5-028 107760384-107770945 protein_coding
  ENSMUST00000183307 Rbm5-006 107740495-107770981 retained_intron
  ENSMUST00000192130 Rbm5-025 107754095-107770972 nonsense_mediated_decay
  ENSMUST00000193342 Rbm5-024 107751910-107767597 nonsense_mediated_decay
  ENSMUST00000194400 Rbm5-026 107746145-107751910 protein_coding
  ENSMUST00000194682 Rbm5-023 107754099-107757260 retained_intron
  ENSMUST00000194801 Rbm5-027 107740496-107760563 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000035199ENSMUST00000182371ENSMUST00000182659ENSMUST00000183307ENSMUST00000194801
Transcript ID C166 Tie2+ EC mES
ENSMUST00000035199 6.413±1.35 N/A N/A
ENSMUST00000182371 6.715±0.07 9.872±0.53 N/A
ENSMUST00000182659 15.710±2.09 10.247±0.88 15.830±2.51
ENSMUST00000183307 2.434±0.43 6.395±2.83 2.157±0.68
ENSMUST00000194801 N/A 12.109±0.02 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000245 ISS spliceosomal complex assembly
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0043065 ISS positive regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078781 si:ch211-161c3.6 protein_coding Danio_rerio
ENSG00000003756 RBM5 RNA binding motif protein 5 protein_coding Homo_sapiens

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