ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034684 Sema3f 10090 - 9:107681500-107710475 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000080560 Sema3f-001 107681500-107710475 protein_coding
  ENSMUST00000192157 Sema3f-009 107684130-107684771 retained_intron
  ENSMUST00000192712 Sema3f-007 107687756-107689917 retained_intron
  ENSMUST00000192727 Sema3f-012 107682418-107705556 protein_coding
  ENSMUST00000192783 Sema3f-003 107687742-107692642 protein_coding
  ENSMUST00000193108 Sema3f-006 107688326-107709479 protein_coding
  ENSMUST00000193665 Sema3f-002 107687275-107692714 processed_transcript
  ENSMUST00000194039 Sema3f-010 107683122-107710019 nonsense_mediated_decay
  ENSMUST00000194424 Sema3f-013 107683991-107687317 nonsense_mediated_decay
  ENSMUST00000194846 Sema3f-011 107684007-107684797 retained_intron
  ENSMUST00000195023 Sema3f-004 107689686-107692703 protein_coding
  ENSMUST00000195267 Sema3f-008 107683122-107684761 retained_intron

Mus musculus Ensembl GRCm38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000080560ENSMUST00000192727ENSMUST00000194039ENSMUST00000195267
Transcript ID C166 Tie2+ EC mES
ENSMUST00000080560 8.740±0.16 1.040±0.00 N/A
ENSMUST00000192727 30.425±4.32 1.111±0.68 N/A
ENSMUST00000194039 N/A 1.244±0.00 N/A
ENSMUST00000195267 N/A N/A 2.240±0.00

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001755 IMP neural crest cell migration
GO:0004872 IEA receptor activity
GO:0005576 IEA extracellular region
GO:0007411 IDA axon guidance
GO:0016020 IEA membrane
GO:0021612 IMP facial nerve structural organization
GO:0021637 IMP trigeminal nerve structural organization
GO:0021675 IMP nerve development
GO:0021785 IMP branchiomotor neuron axon guidance
GO:0036486 IMP ventral trunk neural crest cell migration
GO:0045499 IDA chemorepellent activity
GO:0048843 IGI negative regulation of axon extension involved in axon guidance
GO:0048846 IMP axon extension involved in axon guidance
GO:0050919 IGI negative chemotaxis
GO:0061549 IMP sympathetic ganglion development
GO:0097490 IMP sympathetic neuron projection extension
GO:0097491 IMP sympathetic neuron projection guidance
GO:1901166 IMP neural crest cell migration involved in autonomic nervous system development
GO:1902285 IMP semaphorin-plexin signaling pathway involved in neuron projection guidance
GO:1902287 IMP semaphorin-plexin signaling pathway involved in axon guidance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011163 sema3fa protein_coding Danio_rerio
ENSDARG00000055373 sema3fb protein_coding Danio_rerio
ENSG00000001617 SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F protein_coding Homo_sapiens

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