ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034848 Ttc21b 10090 - 2:66184327-66256617 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102718 Ttc21b-001 66184327-66256617 protein_coding
  ENSMUST00000125446 Ttc21b-003 66184643-66256592 protein_coding
  ENSMUST00000131503 Ttc21b-002 66231116-66249410 retained_intron
  ENSMUST00000169968 Ttc21b-004 66218015-66235138 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000102718ENSMUST00000125446ENSMUST00000131503ENSMUST00000169968
Transcript ID C166 Tie2+ EC mES
ENSMUST00000102718 8.262±0.52 1.091±0.87 2.337±0.15
ENSMUST00000125446 N/A 0.166±0.00 N/A
ENSMUST00000131503 N/A 2.546±0.63 N/A
ENSMUST00000169968 N/A 0.310±0.03 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00087V CIL_00087V_0002 VISTA
CIL_0006CI CIL_0006CI_0002 CGP
CIL_0006CL CIL_0006CL_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005929 IDA cilium
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007224 IMP smoothened signaling pathway
GO:0008589 IMP regulation of smoothened signaling pathway
GO:0021591 IMP ventricular system development
GO:0021798 IMP forebrain dorsal/ventral pattern formation
GO:0030991 ISS intraciliary transport particle A
GO:0035721 IMP intraciliary retrograde transport
GO:0035735 IMP intraciliary transport involved in cilium morphogenesis
GO:0060271 IMP cilium morphogenesis
GO:0061512 IEA protein localization to cilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012368 ttc21b protein_coding Danio_rerio
ENSG00000123607 TTC21B tetratricopeptide repeat domain 21B protein_coding Homo_sapiens

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