ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037446 Tulp1 10090 - 17:28351515-28365182 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041819 Tulp1-001 28351515-28365148 protein_coding
  ENSMUST00000114794 Tulp1-004 28355817-28365182 protein_coding
  ENSMUST00000123797 Tulp1-011 28353062-28359229 protein_coding
  ENSMUST00000125876 Tulp1-006 28361650-28362957 retained_intron
  ENSMUST00000129375 Tulp1-012 28351854-28358662 nonsense_mediated_decay
  ENSMUST00000130877 Tulp1-005 28351515-28355066 retained_intron
  ENSMUST00000131604 Tulp1-010 28358450-28362432 retained_intron
  ENSMUST00000140250 Tulp1-002 28352530-28362920 retained_intron
  ENSMUST00000142143 Tulp1-003 28352538-28356376 retained_intron
  ENSMUST00000146493 Tulp1-009 28363686-28365139 retained_intron
  ENSMUST00000148188 Tulp1-007 28351516-28358694 protein_coding
  ENSMUST00000150341 Tulp1-008 28362695-28365146 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000041819ENSMUST00000114794ENSMUST00000123797ENSMUST00000125876ENSMUST00000129375ENSMUST00000130877ENSMUST00000146493ENSMUST00000148188
Transcript ID C166 Tie2+ EC mES
ENSMUST00000041819 N/A 0.063±0.00 0.122±0.03
ENSMUST00000114794 N/A 0.096±0.00 N/A
ENSMUST00000123797 0.023±0.00 N/A 0.213±0.00
ENSMUST00000125876 N/A N/A 0.087±0.00
ENSMUST00000129375 0.073±0.01 N/A 0.371±0.00
ENSMUST00000130877 N/A 0.099±0.01 0.167±0.06
ENSMUST00000146493 N/A N/A 0.747±0.00
ENSMUST00000148188 0.087±0.04 N/A 0.239±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008UQ CIL_0008UQ_0002 VISTA
CIL_0002F1 CIL_0002F1_0002 CGP
CIL_0002F0 CIL_0002F0_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0001895 IEA retina homeostasis
GO:0001917 IDA photoreceptor inner segment
GO:0005515 IPI protein binding
GO:0005546 ISS phosphatidylinositol-4,5-bisphosphate binding
GO:0005576 IEA extracellular region
GO:0005737 IEA cytoplasm
GO:0005886 ISS plasma membrane
GO:0006909 IEA phagocytosis
GO:0007602 IMP phototransduction
GO:0008020 IMP G-protein coupled photoreceptor activity
GO:0009584 IMP detection of visible light
GO:0016358 IMP dendrite development
GO:0030054 IEA cell junction
GO:0042462 IMP eye photoreceptor cell development
GO:0042995 ISS cell projection
GO:0045202 IDA synapse
GO:0045494 IMP photoreceptor cell maintenance
GO:0050766 ISS positive regulation of phagocytosis
GO:0050908 IEA detection of light stimulus involved in visual perception
GO:0051015 ISS actin filament binding
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075295 tulp1a protein_coding Danio_rerio
ENSDARG00000078210 tulp1b protein_coding Danio_rerio
ENSG00000112041 TULP1 tubby like protein 1 protein_coding Homo_sapiens

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