ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037791 Phf12 10090 + 11:77982754-78030539 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049167 Phf12-001 77982802-78030539 protein_coding
  ENSMUST00000108360 Phf12-002 77982754-78026214 protein_coding
  ENSMUST00000123662 Phf12-006 78023719-78026016 nonsense_mediated_decay
  ENSMUST00000125079 Phf12-008 78028110-78029577 retained_intron
  ENSMUST00000131680 Phf12-004 78023696-78028847 nonsense_mediated_decay
  ENSMUST00000141620 Phf12-007 78023595-78025961 retained_intron
  ENSMUST00000153428 Phf12-003 78023381-78026192 protein_coding
  ENSMUST00000153747 Phf12-005 78023629-78026182 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000049167ENSMUST00000108360
Transcript ID C166 Tie2+ EC mES
ENSMUST00000049167 13.036±1.65 7.312±0.67 10.294±2.93
ENSMUST00000108360 6.104±0.67 4.336±1.47 7.027±0.61

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0006M6 CIL_0006M6_0002 CGP
CIL_0006M3 CIL_0006M3_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISO negative regulation of transcription from RNA polymerase II promoter
GO:0001106 ISO RNA polymerase II transcription corepressor activity
GO:0001222 IPI transcription corepressor binding
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016580 ISO Sin3 complex
GO:0017053 ISS transcriptional repressor complex
GO:0035091 IEA phosphatidylinositol binding
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074303 phf12a protein_coding Danio_rerio
ENSDARG00000075509 phf12b protein_coding Danio_rerio
ENSG00000109118 PHF12 PHD finger protein 12 protein_coding Homo_sapiens

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