ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039218 Srrm2 10090 + 17:23790662-23824741 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088621 Srrm2-001 23803221-23824741 protein_coding
  ENSMUST00000186045 Srrm2-008 23811672-23812600 nonsense_mediated_decay
  ENSMUST00000186259 Srrm2-009 23821387-23822660 nonsense_mediated_decay
  ENSMUST00000186914 Srrm2-004 23819308-23822528 processed_transcript
  ENSMUST00000186961 Srrm2-012 23790662-23808518 protein_coding
  ENSMUST00000189977 Srrm2-003 23811900-23816492 retained_intron
  ENSMUST00000190293 Srrm2-007 23808098-23808708 retained_intron
  ENSMUST00000190568 Srrm2-010 23823525-23824327 retained_intron
  ENSMUST00000190686 Srrm2-002 23803187-23824736 protein_coding
  ENSMUST00000191385 Srrm2-006 23807918-23810006 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000088621ENSMUST00000186914ENSMUST00000190686
Transcript ID C166 Tie2+ EC mES
ENSMUST00000088621 6.275±0.00 12.162±11.12 38.592±8.55
ENSMUST00000186914 N/A 24.387±0.00 N/A
ENSMUST00000190686 32.319±6.37 13.013±10.11 49.699±13.82

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0000JU CIL_0000JU_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0015030 IEA Cajal body
GO:0016607 IEA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0047485 IEA protein N-terminus binding
GO:0070742 IEA C2H2 zinc finger domain binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037965 srrm2 protein_coding Danio_rerio
ENSG00000167978 SRRM2 serine/arginine repetitive matrix 2 protein_coding Homo_sapiens

Loading