ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039656 Rxrb 10090 + 17:34031812-34038393 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044858 Rxrb-001 34031812-34038393 protein_coding
  ENSMUST00000116612 Rxrb-003 34032401-34038393 protein_coding
  ENSMUST00000173354 Rxrb-002 34032375-34037815 protein_coding
  ENSMUST00000173554 Rxrb-004 34032196-34034202 protein_coding
  ENSMUST00000174033 Rxrb-008 34036367-34037307 retained_intron
  ENSMUST00000174130 Rxrb-005 34033908-34036373 retained_intron
  ENSMUST00000174299 Rxrb-010 34032183-34037700 protein_coding
  ENSMUST00000174578 Rxrb-009 34036463-34037534 retained_intron
  ENSMUST00000174645 Rxrb-007 34036323-34037274 retained_intron
  ENSMUST00000174740 Rxrb-006 34033552-34036010 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000044858ENSMUST00000116612ENSMUST00000174299
Transcript ID C166 Tie2+ EC mES
ENSMUST00000044858 8.067±0.95 7.772±6.71 4.220±3.23
ENSMUST00000116612 7.309±1.07 3.718±1.60 2.067±0.00
ENSMUST00000174299 10.105±1.15 11.458±0.11 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001701 IGI in utero embryonic development
GO:0001893 IGI maternal placenta development
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0004886 IDA 9-cis retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0042803 IDA protein homodimerization activity
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IGI sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0055012 IGI ventricular cardiac muscle cell differentiation
GO:0060038 IGI cardiac muscle cell proliferation
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002006 rxrbb protein_coding Danio_rerio
ENSDARG00000078954 rxrba protein_coding Danio_rerio
ENSG00000204231 RXRB retinoid X receptor, beta protein_coding Homo_sapiens

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